View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15908_high_15 (Length: 408)
Name: NF15908_high_15
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 47091096 - 47090715
Alignment:
| Q |
18 |
agatggtcttgctggagaattacagtgccctgaattacacaggtgatttctcaaccttacaatacaagtttttcatacatgaatttgnnnnnnnnncttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47091096 |
agatggtcttgctggagaattacagtgccctgaattacacaggtgatttctcaaccttacaatacaagtttttcatacatgaatttgtttttttttcttt |
47090997 |
T |
|
| Q |
118 |
ct----gttgatattgaaatgcaataatcaaatttgcaacttgttacatggtagaaaatggcccaaagtaggtccctttcagaattatacagcaaatcta |
213 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47090996 |
ctttctgttgatattgaaatgcaataatcaaatttgcaacttgttacatggtagaaaatggcccaaagtaggtccctttcagaattatatagcaaatcta |
47090897 |
T |
|
| Q |
214 |
aataaaatggaaaagtcaaaagtaattagatggaataggattcatttccaatcaaaattgtccattggttggtcctgagaattcttctggataagttagt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47090896 |
aataaaatggaaaagtcaaaagtaattagatggaataggattcatttccaatcaaaattgtccattggttggtcctgagaattcttctggataagttagt |
47090797 |
T |
|
| Q |
314 |
aggaccaaacaaagcatatgctatttttggaaaaagaatctactttggacatattcattttgtgaaatttaatattctgcct |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47090796 |
aggaccaaacaaagcatatgctatttttggaaaaagaatctactttggacatattcattttgtgaaatttaatattctgcct |
47090715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University