View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_16 (Length: 389)
Name: NF15908_high_16
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 27843219 - 27842855
Alignment:
| Q |
19 |
agttgttattactctcgtcaatttcatttacttcgacgtgaacagtgtc--cattgcgctctcgacnnnnnnnttctagcatgttcaacaaaga---gtc |
113 |
Q |
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| T |
27843219 |
agttgttattactctcgtcaatttcatttacttcgacgtgaacagtgtcatcattgcgctctcgacaaaaaatttctagcatgttcaacaaagaagagtt |
27843120 |
T |
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| Q |
114 |
cattaatatcgtcaaaagtaagtgtggtctctgaaaacatacctatgagcatgcaaaagaggatggaaaatgtgaactcacaccagaggcttcatgatgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27843119 |
cattaatatcgtcaaaagtaagtgtggtctctgaaaacatacctatgagcatgcaaaagaggatggaaaatgtgaactcacaccagaggcttcatgatgt |
27843020 |
T |
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| Q |
214 |
gatctatcgtaaacatgtaaagttcaaagattttttcttgaggaagaagaattcaacgtgcttacagcactggctagggttcaagattaagctttgacct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27843019 |
gatctatcgtaaacatgtaaagttcaaagattttttcttgag---caagaattcaatgcgcttacaacactggctagggttcaagattaagctttgacct |
27842923 |
T |
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| Q |
314 |
tttctaaatatttacttaaggttgacatatctgctaccttcatcagtcttagtgtcttgtttcttctc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27842922 |
tttctaaatatttacttaaggttgacatatctgctaccttcatcagtcttagtgtcttgtttcttctc |
27842855 |
T |
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