View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_18 (Length: 373)
Name: NF15908_high_18
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 50071058 - 50070732
Alignment:
| Q |
19 |
acactaatatatattttttataatatatcatgtaaattattagttttgtgtgtacgttttttaatggaag---caatgagagcaattgaaattgccttcc |
115 |
Q |
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| T |
50071058 |
acactaatatatattttttataatat--catgtaaattattagttttgtgtgtaccttttttaatggaagaagcaatgagagcaattgaaattgccttcc |
50070961 |
T |
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| Q |
116 |
tcaacaacaactggtcgcacctttggcttgagttagattctgttatggtagtccatgccttgaaatccaacactctaattctttggaggttaaggaacaa |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50070960 |
tcaacaacaactggtcacacctttggcttgagttagattctgttatggtagtccatgccttgaaatccaacactctaattctttggaggttaaggaacaa |
50070861 |
T |
|
| Q |
216 |
atggttcaattgttgtcaatggatagattctatgaannnnnnnctctcacatctatagagagggtaactaatgtgttgatgacttagcaaatattggtct |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |
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| T |
50070860 |
atggttcaattgttgtcaatggataggttctatgaatttttttctctcacatctatagagaggataactaatgtgttgatggcttagtaaatattggtct |
50070761 |
T |
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| Q |
316 |
tagcccgaatcaattcactttgtggaatt |
344 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
50070760 |
taccccgaatcaattcactttgtggaatt |
50070732 |
T |
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