View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_high_24 (Length: 303)

Name: NF15908_high_24
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_high_24
NF15908_high_24
[»] chr1 (1 HSPs)
chr1 (19-303)||(1504195-1504479)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 1504479 - 1504195
Alignment:
Q  19 gctctggccctaacccaagagttgt---gactcttgcatggttgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttagaaaaaga 115  Q
    |||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1504479 gctctggccctaacccaagagttgttgtgactcttgcatgattgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttag-aaaaga 1504381  T
Q  116 gaaattatacggtctcccttnnnnnnngaa-----attttactttctaatgtacgtacggaacggtgcagttttgttgaaaaacaatataaacatgtatt 210  Q
     |||||||||||||||||||       |||     ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  1504380 aaaattatacggtctcccttaaaaaaagaaattatattatactttctaatgtacgtacggaacggtgcagtttagttgaaaaacaatataaacctgtatt 1504281  T
Q  211 ttccagaaaggaaaagggaaagcaaagatagattaatgtttccaaaacttttatttctaaacagctcaatttttgttaagataaccatttaac 303  Q
    |||| |||||||      ||||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||||||||    
T  1504280 ttcctgaaagga------aaagcaaagatagattaatgtttccaaaaattttacttctgaacagctcaa-ttttgttaagataaccatttaac 1504195  T

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