View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15908_high_25 (Length: 301)
Name: NF15908_high_25
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_25 |
 | |
|
| [»] scaffold0535 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 4402626 - 4402898
Alignment:
| Q |
20 |
tgttcgtgattgtaatttttatagtattatttggcaccatgttggcttccatgatgtgaacttctttgtgaatctagatgtgattgactggctgaaagaa |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4402626 |
tgttcgtgattgtaatttttctagtattatttggcaccatgttggcttccatgatgtgaacttctttgcgaatctagatgtgattgactggctgaaagaa |
4402725 |
T |
|
| Q |
120 |
gggtatgcgggtcctcactctttccttttcgccgctactgtttggtgggcttggcgtcaccgtaatcttatgtgtttaagcaatgagaactgacctcttt |
219 |
Q |
| |
|
|||| || ||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4402726 |
gggtctgtgggccctcactctttccttttcgctgctactgtttggtggtcttggcgtcaccgtaatcttatgtatttaagcattgagaactgacctcttt |
4402825 |
T |
|
| Q |
220 |
gtcgtctctcctacaacattcatagcatggtggattccttcatatcttgttttgcttctaatcctagaataat |
292 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4402826 |
gtcgtctctcctacaacattcatagtatggtggattccttcatatcttgttttgcttctaatcccagaataat |
4402898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 61 - 283
Target Start/End: Original strand, 33752153 - 33752375
Alignment:
| Q |
61 |
ttggcttccatgatgtgaacttctttgtgaatctagatgtgattgactggctgaaagaagggtatgcgggtcctcactctttccttttcgccgctactgt |
160 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| | ||| ||||||||||| || ||||||| ||| || |
|
|
| T |
33752153 |
ttggcttccatgatgtgaacttctttgcgaatctagatgtggttgactggctgaaggaagggtctatgggccctcactcttttctattcgccgttacggt |
33752252 |
T |
|
| Q |
161 |
ttggtgggcttggcgtcaccgtaatcttatgtgtttaagcaatgagaactgacctctttgtcgtctctcctacaacattcatagcatggtggattccttc |
260 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33752253 |
ttggtggtcttggcgtcaccgtaatcttatgtgtttaagtaatgagaattggcctctttttcgtctctcctacaacattcatagcatggtggattccttc |
33752352 |
T |
|
| Q |
261 |
atatcttgttttgcttctaatcc |
283 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33752353 |
atatcttgttttgcttctaatcc |
33752375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 27848712 - 27848600
Alignment:
| Q |
158 |
tgtttggtgggcttggcgtcaccgtaatcttatgtgtttaagcaatgagaactgacctctttgtcgtctctcctacaacattcatagcatggtggattcc |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||| || | | | ||| ||| |||||||||||||| | ||||| ||||| |
|
|
| T |
27848712 |
tgtttggtgggcttggcgtcaccgtaatcttatgtgcttaaacaatgagaattggcatataaatcgcctcgcctacaacattcatggtatggttgattct |
27848613 |
T |
|
| Q |
258 |
ttcatatcttgtt |
270 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
27848612 |
tttaaatcttgtt |
27848600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0535 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0535
Description:
Target: scaffold0535; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 8311 - 8574
Alignment:
| Q |
20 |
tgttcgtgattgtaatttttatagtattatttggcaccatgttggcttccatgatgtgaacttctttgtgaatctagatgtgattgactggctgaaagaa |
119 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| || ||| |||| ||| |
|
|
| T |
8311 |
tgtttgtgattgtaacttttatcgtattatttggcaccatgttggcttccatgatgtgaacttctatgaaaatttagacgtgatagattggttgaaggaa |
8410 |
T |
|
| Q |
120 |
gggtatgcgggtcctcactctttccttttcgccgctactgtttggtgggcttggcgtcaccgtaatcttatgtgtttaagcaatgagaactgacctcttt |
219 |
Q |
| |
|
|| | | || ||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
8411 |
ggttctatggaacctcactctttccttttcgccgccactatttggtgggcttggcgacatcgtaatcttaagtgtttaagcaatgagaattggcctcttt |
8510 |
T |
|
| Q |
220 |
gtcgtctctcctacaacattcatagcatggtggattccttcatatcttgttttgcttctaatcc |
283 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8511 |
gttgcctctcctacaacattcatagcatggtggattccttcatattttgttttgcttctaatcc |
8574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 41386413 - 41386535
Alignment:
| Q |
153 |
gctactgtttggtgggcttggcgtcaccgtaatcttatgtgtttaagcaatgagaactgacctctttgtcgtctctcctacaacattcatagcatggtgg |
252 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||||||||||||||||||||| || | ||| ||||||||||||| ||||| ||||| | ||| | |
|
|
| T |
41386413 |
gctactatttggtgggcttggcaccaccaaaatcttatgtgtttaagcaatgagaattgtctgcttagtcgtctctcctataacatccatagtacggtag |
41386512 |
T |
|
| Q |
253 |
attccttcatatcttgttttgct |
275 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
41386513 |
attctctcatatcttgttttgct |
41386535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 39407260 - 39407325
Alignment:
| Q |
197 |
aagcaatgagaactgacctctttgtcgtctctcctacaacattcatagcatggtggattccttcat |
262 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
39407260 |
aagcaatgaaaactggcctctttgtcgactctcctacaacattcatagcatagtggactccttcat |
39407325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University