View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_27 (Length: 280)
Name: NF15908_high_27
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_27 |
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| [»] scaffold0011 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 135880 - 136044
Alignment:
| Q |
115 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnngtagttgttgtgttgttctacatcttgaat |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
135880 |
cccaaaatctgagctgtttttcaattttttgtgatactattttgttctctatttagttaattttttttt-gtagttgttgtgttgttctacatcttgaat |
135978 |
T |
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| Q |
215 |
gtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaagactatttttctt |
280 |
Q |
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| T |
135979 |
gtcaattataaatggaagtttattcatacacataaataatgtggtatttaaaagactatttttctt |
136044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 135781 - 135829
Alignment:
| Q |
16 |
cattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
64 |
Q |
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| T |
135781 |
cattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
135829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 115 - 280
Target Start/End: Original strand, 25809216 - 25809378
Alignment:
| Q |
115 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnngtagttgttgtgttgttctacatcttgaat |
214 |
Q |
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| T |
25809216 |
cccaaaatctgagctgtttgtcaatttcttgtgatactattttgttccctatttagttaattttttt---gtagttgttgtgttgttctacatcttgaat |
25809312 |
T |
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| Q |
215 |
gtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaagactatttttctt |
280 |
Q |
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| T |
25809313 |
gtcaattataaatggaaatttattcatacacataaataatgtggtatttaaaagactatttttctt |
25809378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 25809117 - 25809165
Alignment:
| Q |
16 |
cattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
64 |
Q |
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| T |
25809117 |
cattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
25809165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 23068199 - 23068031
Alignment:
| Q |
115 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnn---gtagttgttgtgttgttctacatcttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| |
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| T |
23068199 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaatttttttttttttgtaattattgtgttgttctacatcttg |
23068100 |
T |
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| Q |
212 |
aatgtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaagactatttttctt |
280 |
Q |
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| T |
23068099 |
aatgtcaattataaatggaagtttattcatagacataaataatttggtatttaaaagactatttttctt |
23068031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 23068298 - 23068250
Alignment:
| Q |
16 |
cattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
64 |
Q |
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| T |
23068298 |
cattgaacccatctctcatctcattacaagcatgcacccacacaggtat |
23068250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 115 - 276
Target Start/End: Complemental strand, 26909050 - 26908897
Alignment:
| Q |
115 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctatttagttaannnnnnnnnngtagttgttgtgttgttctacatcttgaat |
214 |
Q |
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| T |
26909050 |
cccaaaatctgagctgtttttcaatttcttgtgatacggttttgttctccatttagttaatttctt--------ttgttgtgttgttctacatcttgaat |
26908959 |
T |
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| Q |
215 |
gtcaattataaatggaagtttattcatagacataaataatgtggtatttaaaagactatttt |
276 |
Q |
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| T |
26908958 |
ctaaattatcaatggaagtttattcatagacataaatattgtggtatttaaaagactatttt |
26908897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 20746498 - 20746552
Alignment:
| Q |
115 |
cccaaaatctgagctgtttttcaatttcttgtgatactattttgttctctattta |
169 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
20746498 |
cccaaaatctgagctgtttttcaatttcttgtaatacggttttgttctctattta |
20746552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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