View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_29 (Length: 269)
Name: NF15908_high_29
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 2364869 - 2365119
Alignment:
| Q |
1 |
aatgcaggaggagggtatccaccttctggttatcctcatcatcaaccatcttatcatgcaccacatggttatccttcaggtacacttgatcatcctaatt |
100 |
Q |
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| T |
2364869 |
aatgcaggaggagggtatccaccttctggttatcctcatcatcaaccatcttatcatgcaccacatggttatccttcaggtacacttgatcatcctaatt |
2364968 |
T |
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| Q |
101 |
tgttatcagtaataaacatatcagcgattcaagtactccttgtacttgcttcggcttcttcctttatttatatattcgatttccatttttnnnnnnngta |
200 |
Q |
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| T |
2364969 |
tgttatcagtaataaacat---agcgattcgagtactccttgtacttgcttcggcttcttcctttatttatatattcgatttccatttttaaaaaaagta |
2365065 |
T |
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| Q |
201 |
ataaatatattagcatgcatataaacaatcttttatgatctacctgatgttggt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2365066 |
ataaatatattagcatgcatataaacaatcttttatgatctacctgatgttggt |
2365119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 2368646 - 2368678
Alignment:
| Q |
7 |
ggaggagggtatccaccttctggttatcctcat |
39 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
2368646 |
ggaggagggtatccaccttccggttatcctcat |
2368678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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