View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_44 (Length: 214)
Name: NF15908_high_44
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 776750 - 776651
Alignment:
| Q |
23 |
attgatgacaagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacatt |
122 |
Q |
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| T |
776750 |
attgatgacaagtgatcccctcatgaaaggcaagtccaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcagagcatacatt |
776651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 817972 - 817869
Alignment:
| Q |
23 |
attgatgacaagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacatt |
122 |
Q |
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| T |
817972 |
attgatgacaagtgatcacctcatgaaaggcaagtccaaagcatatataaaagcatggtcatgtagtagagccaatgagcaaattatcaaagcatacatt |
817873 |
T |
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| Q |
123 |
atta |
126 |
Q |
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|||| |
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| T |
817872 |
atta |
817869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 8458598 - 8458773
Alignment:
| Q |
23 |
attgatgacaagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacatt |
122 |
Q |
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| T |
8458598 |
attgatgacaagtgatcccctcatgaaaggcaagtccaaagcatatataaaagcatgtgcatgtagtagggccaatgagcaagttatcaaagcacatatt |
8458697 |
T |
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| Q |
123 |
attatattagcaacnnnnnnnnnnnntacattgttaattatgcgtattaaatcaatgaaccctcttgtggtctgtg |
198 |
Q |
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| T |
8458698 |
attatatttgcaacaaaaagaaagcatacattgttaattatgcgtattaaatcattaactcctcttgtggtttgtg |
8458773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 776596 - 776547
Alignment:
| Q |
149 |
tacattgttaattatgcgtattaaatcaatgaaccctcttgtggtctgtg |
198 |
Q |
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| T |
776596 |
tacattattaattatgcgtattaaatcaatgaaccctcttgtggtttgtg |
776547 |
T |
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