View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_6 (Length: 465)
Name: NF15908_high_6
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 465
Target Start/End: Complemental strand, 45283914 - 45283477
Alignment:
| Q |
15 |
cagagagagtctcaagaaagtcaaaaccccaaaatctccagcttataatctggaaacatatacattgatttaatgcacattttgtacaacctctaaatca |
114 |
Q |
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| T |
45283914 |
cagagagagtctcaagaaagtcaaaaccccaaaatcgccagcttataatctggaaacatatacattgatttaatgcacattttgtacaacctctaaatca |
45283815 |
T |
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| Q |
115 |
ctaaccccatatttgactttaaacatatctatctatcnnnnnnnaaaaactcatatagacggtaatttatgattagtagacggtataaaaagttgtacgc |
214 |
Q |
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| T |
45283814 |
ctaacc--atatttgactttaaagatatctatctatctt-----aaaaactcatata--cggtaatttatgattagtagacggtataaaaagttgtacgc |
45283724 |
T |
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| Q |
215 |
ccacggtgcatgaaaattaatctctatatacatatgccattaaatatgaactcaatttaacttaactttaatcatgtctatattcacatgcagatgcata |
314 |
Q |
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| T |
45283723 |
ccacggtgcatgaaaattaatctctatatacat--ggcattaaatatgaactcaatttaacttaactttaatcatgtctatattcacatgcagatgcata |
45283626 |
T |
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| Q |
315 |
aaagttagttacagttgtagaaagtaaaagaaatttaatattagaggcaatatagatagatacatacatacatcatacctgtagttaagttgggaagaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283625 |
aaagttagttacagttgtagaaagtaaaagaaatttaatattagaggcaatatagatagatacatacatacatcatacctgtagttaagttgggaagaaa |
45283526 |
T |
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| Q |
415 |
agaaaataatgaatggagacaaaaacaagagtgaaatgaacatgggaaaat |
465 |
Q |
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| T |
45283525 |
agaaaataatgaatggagacaaaaaca--agtgaaatgaacatgggaaaat |
45283477 |
T |
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