View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_7 (Length: 465)
Name: NF15908_high_7
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 2327463 - 2327905
Alignment:
| Q |
8 |
taggtgcttaactaactatataagtgaaaagaataatgtttacgagacttatctcaaaatacaacatattcttctagatctgacagcattttggatgcag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327463 |
taggtgcttaactaactatataagtgaaaagaataatgtt-atgagacttatctcaaaatacaacatattcttctagatctgacagcattttggatgcag |
2327561 |
T |
|
| Q |
108 |
tgtttcttacaggcttcttcacagatacaccgatatagcaccattctcagggttaacccccacataaaccagataacacactttggtattgaattaacct |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2327562 |
tgtttcttacaggcttcatcacagatacaccgatatagcaccattctcagggttaacccccacatataccagataacacactttggtattgaattaacct |
2327661 |
T |
|
| Q |
208 |
tttcagtgtgccccccttgaaaaatcaacaattttcgatagctaccaaccttcgtttcccgaaaaaggaaactggtgtcaactattgcttaatagtgtgt |
307 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327662 |
tttcagtgtgccccccttgaaaaataaacaattttcgatagctaccaaccttcgtttcccgaaaaaggaaactggtgtcaactattgcttaatagtgtgt |
2327761 |
T |
|
| Q |
308 |
gtacagttataataggtttggcttnnnnnnntcgtttactgcataaaaaacattgggtaaagaagtaggatgattctctct-nnnnnnnggtaaatttgt |
406 |
Q |
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|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2327762 |
gtacagttataataggtttggcttaaaaaaatcgatcactgcataaaaaacattgggtaaagaagtaggatgattctctctaaaaaaaatgtaaatttgt |
2327861 |
T |
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| Q |
407 |
gtggtgatttttagggtacacaaatggttacaagttcattatct |
450 |
Q |
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||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
2327862 |
gtgatggtttttagggtacacaaatggttataagttcattatct |
2327905 |
T |
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