View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_8 (Length: 464)
Name: NF15908_high_8
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 6 - 448
Target Start/End: Complemental strand, 2579675 - 2579236
Alignment:
| Q |
6 |
cacagatttatcctagtttgaacaaaataaattagtagaaccataacttggaagtcttgctggtttgatgacgtggattcaagttttaaaacattaccta |
105 |
Q |
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| T |
2579675 |
cacagatttatcctagtttgaacaaaataaattagtagaaccataacttggaagtcttgctggtttga---cgtggattcaagttttaaaacattaccta |
2579579 |
T |
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| Q |
106 |
caaattttttggagtatttgagcttcttagttttgtttataaaggtgtctccgttttttagggatatggatttcaaagaagccgccaaggacaaaatccg |
205 |
Q |
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| T |
2579578 |
cacaatttttggagtatttgagcttcttagttttgtttataaacgtgtctccgttttttagggatatggatttcaaagatgccgccaaggacaaaatccg |
2579479 |
T |
|
| Q |
206 |
ttgggatgggactatctctgtaaatgatttttccctttctgcttctacattttctgacaagtggaaaatgttgaatccttcctttcctccatggttatgg |
305 |
Q |
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| T |
2579478 |
ttgggatgggactatctctgtaaatgatttttccctttctgcttctacattttctgacaagtggaaaatgttcaatccttcctttcctccatggttatgg |
2579379 |
T |
|
| Q |
306 |
accgctattccaaaacatcatttgggtcctcctaaggtgactcccttgtcataaggctataaaatccactgccttgtctccatgcttagcaactgttctg |
405 |
Q |
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| T |
2579378 |
accgctattccgaaacatcatttgggtcctcctaaggtgactcccttgtcataaggctataaaatccactgccttgtctccatgcttagcaactgttctg |
2579279 |
T |
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| Q |
406 |
aatcttttttatctgcatgtctctccctatgccaggttgaagg |
448 |
Q |
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| T |
2579278 |
aatcttttttatctgcatgtctctccctttgccaggttgaagg |
2579236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 11380298 - 11380357
Alignment:
| Q |
6 |
cacagatttatcctagtttgaacaaaataaattagtagaaccataacttggaagtcttgc |
65 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
11380298 |
cacagattcatcctagtttgaacaaaataaattagttgaaccataactcggaagtcttgc |
11380357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 9201211 - 9201120
Alignment:
| Q |
338 |
taaggtgactcccttgtcataaggctataaaatccactgccttgtctccatgcttagcaactgttctgaatcttttttatctgcatgtctctc |
430 |
Q |
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| T |
9201211 |
taaggtgactcatttgtcataaggctctcaaatccaccgccctgt-tccatgcttagcctttctcctgaatattctttatttgcatgtctctc |
9201120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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