View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15908_high_9 (Length: 457)
Name: NF15908_high_9
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 4175965 - 4176409
Alignment:
| Q |
1 |
tatacctttcgtcctttt---tgaaatttaaagcacgtagttcttttccatcctcagatttcagctctatcctgtacagccgaatttatgaactgatata |
97 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4175965 |
tataccttccgtccttttctttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaactgatata |
4176064 |
T |
|
| Q |
98 |
agaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4176065 |
agaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaa |
4176164 |
T |
|
| Q |
198 |
ttgaatcaagagcactccacccatttttggaaagggtgagtgaagttccaccagctctaagtgactccgactgttccagtaccaaagaccgaacaccaag |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4176165 |
ttgaatcaagagcactccacccatttttggaaagggtgagtgaagttccaccagttctaagtgactccgactgttccagtaccaaagaccgaacaccaag |
4176264 |
T |
|
| Q |
298 |
cctgaaaattaaacaatgaataaagtgttatcattaaagtgatgatggtggataaataatagattgaggaactagagttgaaacctgtgaagggatagtg |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4176265 |
cctggaaattaaacaatgaataaagtgttatcattagagtgatgatggtggataaataatagattgaggaactagagttgaaacctgtgaagggatagtg |
4176364 |
T |
|
| Q |
398 |
cagttgcaaggcctgctatcccaccacccacgattacaacatgtt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4176365 |
cagttgcaaggcctgctatcccaccacccacgattacaacatgtt |
4176409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 101 - 442
Target Start/End: Original strand, 4171921 - 4172272
Alignment:
| Q |
101 |
attgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaattg |
200 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
4171921 |
attgtgcaaccaggcaagtgataaaaattaaaac-taacaaattaagttacccttgaatttctaaatattgagttctgaggtaatttgctactccaatgg |
4172019 |
T |
|
| Q |
201 |
aatcaagagcactccacccatttttggaaagggtgagtgaagttccaccagctctaagtgactccgactgttccagtaccaaagaccgaacaccaagcct |
300 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||||||||||| | || ||||||||| ||||| ||||| || | |||||||||||||||||| |
|
|
| T |
4172020 |
aatcaagtacactccacccattcttgaaaagggtgagtgaagttccaccggttcgaagtgactctgactgctccagcacaagagaccgaacaccaagcct |
4172119 |
T |
|
| Q |
301 |
gaaaattaaaca---------atgaataaagtgttatcattaaagtga---tgatggtggataaataatagattgaggaactagagttgaaacctgtgaa |
388 |
Q |
| |
|
|| |||| |||| | |||||| ||||| | || ||| ||||||| || || || ||||||| || |||||||||||||||||||| |
|
|
| T |
4172120 |
gagaattcaacagaagcgggtacaaataaaatgttagaaaaaacatgaaagtgatggtagaaaatgaagagattga-gagctagagttgaaacctgtgaa |
4172218 |
T |
|
| Q |
389 |
gggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgtt |
442 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| || |||||||||| |
|
|
| T |
4172219 |
gggatagagcagttgcaaggcctgcaatgccaccacccacaatgacaacatgtt |
4172272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 4171822 - 4171882
Alignment:
| Q |
17 |
tttgaaatttaaagcacgtagttcttttccatcctcagatttcagctctatcctgtacagc |
77 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||||||| |||| | | |||||||||||| |
|
|
| T |
4171822 |
tttgaaattgaaggcacgtagttctcttccatcctcagacttcaccaccatcctgtacagc |
4171882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University