View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_11 (Length: 437)
Name: NF15908_low_11
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_11 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 3723 - 4131
Alignment:
| Q |
14 |
aaggaacaatctgcatatataaatgaaaataacaatgatactgagtaaataaacaagatgcatgctagccacatacatcaaa-gggggcagcaacaacag |
112 |
Q |
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| T |
3723 |
aaggaacaatctgcatatataaatgaaaataacaatgatactgggtaaataaacaagttgcatgctagccacatacatcaaaagggggcagcaacaacag |
3822 |
T |
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| Q |
113 |
tagagagtagatagagtatagttatagtgaaagtggagaggccaagatctttgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatcc |
212 |
Q |
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| T |
3823 |
tagagagtagatagagtatagttgtagtgaaagtggagaggccaagatctttgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatcc |
3922 |
T |
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| Q |
213 |
aaagaaaaatagaaaatcacatatcaaagttatcgcgcggcagctggttcaggttgggcagagcattagggttttcttgaggatgattgagagaatgtaa |
312 |
Q |
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| T |
3923 |
aaagaaaaatagaaaatcacatatcaaagttatggcgcggcggctggtccaggttgggcagagcattagggttttcttgaggatgattgagagaatgtaa |
4022 |
T |
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| Q |
313 |
catacaaatgacgacgcagcaaatatcgtaaactctttcactatctctgatgtgggagggtcatatgagaagaaactcatgcaaaggccaagaatgtata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4023 |
catacaaatgacgacgcagcaaatatcgtaaactctttcactatctctgatgtgggagggtcatatgagaagaaactcatgcaaaggccaagaatgcata |
4122 |
T |
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| Q |
413 |
ctgaaattt |
421 |
Q |
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| T |
4123 |
ctgaaattt |
4131 |
T |
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