View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_12 (Length: 437)

Name: NF15908_low_12
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_12
NF15908_low_12
[»] chr8 (3 HSPs)
chr8 (1-430)||(31036542-31036971)
chr8 (141-428)||(2994741-2995028)
chr8 (198-332)||(25577590-25577724)
[»] scaffold0067 (1 HSPs)
scaffold0067 (6-407)||(13507-13908)
[»] scaffold1107 (1 HSPs)
scaffold1107 (31-407)||(1-377)
[»] chr4 (1 HSPs)
chr4 (3-416)||(22465317-22465728)
[»] chr3 (2 HSPs)
chr3 (98-325)||(19474312-19474539)
chr3 (141-428)||(37190315-37190602)
[»] chr6 (5 HSPs)
chr6 (141-428)||(33457878-33458165)
chr6 (141-428)||(34822036-34822323)
chr6 (176-325)||(25422691-25422840)
chr6 (6-133)||(2984749-2984876)
chr6 (241-335)||(2984633-2984727)
[»] scaffold0779 (1 HSPs)
scaffold0779 (198-332)||(2208-2342)
[»] chr2 (2 HSPs)
chr2 (98-320)||(18503063-18503285)
chr2 (198-332)||(26363221-26363355)
[»] scaffold0061 (2 HSPs)
scaffold0061 (198-424)||(13752-13978)
scaffold0061 (198-424)||(22810-23036)


Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 31036542 - 31036971
Alignment:
Q  1 gcaagaaacctgattgcataaatcaaagtgtgattgtgactagcatttctcataaaatcacaagaaaaacgtaccctataagtgcagttaggtaaatgca 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  31036542 gcaagaaacctgattgcataaatcaaagtgtgactgtgactagcatttctcataaaatcacaagaccaacctaccctataagtgcagttaggtaaatgca 31036641  T
Q  101 tgtaaatctcaagttcctcccacaaaatcttcaactcatggtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31036642 tgtaaatctcaagttcctcccacaaaatcttcaactcatggtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttctagcatttattc 31036741  T
Q  201 agaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaagga 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31036742 agaaattcgtaccaaattaccttgtgcaaaacgctccttcaaatcattccaaacatcacatgcattttccatgaaaacaattgattgtgtaattgaagga 31036841  T
Q  301 gaggctgaattcacaatccaagagtaaactaacatatcacagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31036842 gaggctgaattcacaatccaagagtaaactaacatatcacagcgattccacgcatgaaaggtaggatcaaaggtgtcaataactggatgaattgttccat 31036941  T
Q  401 cgacaaattcatacttcatttttcccccta 430  Q
    | |||||||||||||||||||| |||||||    
T  31036942 caacaaattcatacttcattttgcccccta 31036971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 141 - 428
Target Start/End: Complemental strand, 2995028 - 2994741
Alignment:
Q  141 gtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattcagaaattcgtaccaaattaccttgtgcaaaactctccttc 240  Q
    |||||||  ||||||||| || ||||||||||   |||| || |||||||||||   ||||||||| || ||||||| |||||| ||||| |  |||||     
T  2995028 gtagaaattagtaacagattttgaatcttgttgtaaagaatagatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaccgttcctta 2994929  T
Q  241 aaatcattccaaacatcacatg-catattccatgaaaacaattgattgtgtaattgaaggagaggctgaattcacaatccaagagtaaactaacatatca 339  Q
    | ||||||||| ||||| |||| | | ||||||||||||||| ||||| | ||||||||||    |||||||||  ||||| |||| ||  | ||||| |    
T  2994928 agatcattccacacatc-catggcgttttccatgaaaacaatagattgagaaattgaaggatctactgaattcaagatccatgagtgaatcagcatatta 2994830  T
Q  340 cagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccatcgacaaattcatacttcatttttccccc 428  Q
    || |||||||| ||| |||||| ||||||||| |  ||  |||| ||| |||| |||||||| ||||||||| ||||||||||||||||    
T  2994829 caccgattccaagcacgaaaagaaggatcaaacgaatctgtaaccggaggaatagttccatcaacaaattcaaacttcatttttccccc 2994741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 25577590 - 25577724
Alignment:
Q  198 ttcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaa 297  Q
    ||||||||||| |||||||| |||||| | ||| |  | ||||| |||||||||||||||||| |||| |||||||||||  || ||||||| |||||||    
T  25577590 ttcagaaattcttaccaaatcaccttgagaaaatcgtttcttcagatcattccaaacatcacacgcattttccatgaaaattatagattgtgcaattgaa 25577689  T
Q  298 ggagaggctgaattcacaatccaagagtaaactaa 332  Q
    | |||  | ||||| |||||||| |||| ||||||    
T  25577690 gaagatacagaattgacaatccatgagtgaactaa 25577724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 6 - 407
Target Start/End: Original strand, 13507 - 13908
Alignment:
Q  6 aaacctgattgcataaatcaaagtgtgattgtgactagcatttctcataaaatcacaagaaaaacgtaccctataagtgcagttaggtaaatgcatgtaa 105  Q
    |||||| |||||||| | |||| | ||||| || ||| ||||||| ||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  13507 aaacctaattgcatataacaaattttgattatgtctatcatttcttataaactcacaagaacaacgtaccctacaagtgcagttaggtacatgcatgtaa 13606  T
Q  106 atctcaagttcctcccacaaaatcttcaactcatggtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattcagaaa 205  Q
    |||||||| ||||||||| |||||||| ||||   |||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||| |    
T  13607 atctcaagatcctcccacgaaatcttccactcggagtagaaagaagtaacagacttagaatcttgttgcaaagtgtaaatttcttgcattaattcagata 13706  T
Q  206 ttcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaaggagaggc 305  Q
    ||| ||||||||  |||||||| ||||  ||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||  |    
T  13707 ttcataccaaatcgccttgtgcgaaacgttcctttaaatcactccaaacatcacatgcattttccatgaagacaattgattgtgcaattgagggagaaac 13806  T
Q  306 tgaattcacaatccaagagtaaactaacatatcacagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccatcgaca 405  Q
    | |||||| ||||||| ||| ||||||||| |  |||||||||||| || ||| ||||||| ||||| |||||| || |||  | ||||||||||| |||    
T  13807 taaattcataatccaatagtgaactaacatgttgcagcgattccacacacgaatagtaggaccaaagttgtcaaaaaatggtgggattgttccatcaaca 13906  T
Q  406 aa 407  Q
    ||    
T  13907 aa 13908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 31 - 407
Target Start/End: Original strand, 1 - 377
Alignment:
Q  31 tgattgtgactagcatttctcataaaatcacaagaaaaacgtaccctataagtgcagttaggtaaatgcatgtaaatctcaagttcctcccacaaaatct 130  Q
    ||||| || ||| ||||||| ||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  1 tgattatgtctatcatttcttataaactcacaagaacaacgtaccctacaagtgcagttaggtacatgcatgtaaatctcaagatcctcccacgaaatct 100  T
Q  131 tcaactcatggtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattcagaaattcgtaccaaattaccttgtgcaaa 230  Q
    || ||||   |||||||||||||||| ||||||||||||||| | ||| |||||||||||||||| ||||||| |||| ||||||||  |||||||| ||    
T  101 tccactcggagtagaaagaagtaacaaacttagaatcttgttgcaaagtgtaaatttcttgcattaattcagatattcataccaaatcgccttgtgcgaa 200  T
Q  231 actctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaaggagaggctgaattcacaatccaagagtaaact 330  Q
    ||  ||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||  || |||||| ||||||| ||| ||||    
T  201 acgttcctttaaatcactccaaacatcacatgcattttccatgaagacaattgattgtgcaattgagggagaaactaaattcataatccaaaagtgaact 300  T
Q  331 aacatatcacagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccatcgacaaa 407  Q
    ||||| |  |||||||||||| || ||| | ||||| ||||| |||||| || |||  | ||||||||||| |||||    
T  301 aacatgttgcagcgattccacacacgaatattaggaccaaagttgtcaaaaaatggtgggattgttccatcaacaaa 377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 3 - 416
Target Start/End: Original strand, 22465317 - 22465728
Alignment:
Q  3 aagaaacctgattgcataaatcaaagtgtgattgtgactagcatttctcataaaatcacaagaaaaacgtaccctataagtgcagttaggtaaatgcatg 102  Q
    ||||||||| ||||||||   |||| | ||||| || |||||||||||||| || ||||||||| || ||||  || ||||||| ||| | | || ||||    
T  22465317 aagaaacctaattgcatatggcaaaatatgattttgtctagcatttctcatgaattcacaagaacaatgtactatacaagtgcaattacgaacatacatg 22465416  T
Q  103 taaatctcaagttcctcccacaaaatcttcaactcatggtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattcag 202  Q
    ||||| |||| ||||||||||| |||||||||| ||  ||||||||| |||||| | ||||||||||||| | |||| ||||||| ||||||   ||||     
T  22465417 taaatttcaaattcctcccacagaatcttcaacccagagtagaaagatgtaacatatttagaatcttgttgcaaagaataaattttttgcatcagttcaa 22465516  T
Q  203 aaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaa-acaattgattgtgtaattgaaggag 301  Q
    | ||||   |||||| || |||||| |||  ||| || |||||| | || |||||||||||||  ||||||||| | ||| ||||||| |||||||||||    
T  22465517 agattc---ccaaatcactttgtgcgaaatgctcatttaaatcacttcatacatcacatgcattctccatgaaatataatagattgtgcaattgaaggag 22465613  T
Q  302 aggctgaattcacaatccaagagtaaactaacatatcacagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccatc 401  Q
    |  ||||||| || |||||||||| ||| ||||||| |||||||||||| ||| ||||  | ||||| || |  ||  | |||||| |||| ||||||||    
T  22465614 aaactgaattaacgatccaagagtgaaccaacatattacagcgattccaagcacgaaagatgggatcgaatgaatctttcactggaggaatcgttccatc 22465713  T
Q  402 gacaaattcatactt 416  Q
     ||||||||| ||||    
T  22465714 aacaaattcaaactt 22465728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 98 - 325
Target Start/End: Original strand, 19474312 - 19474539
Alignment:
Q  98 gcatgtaaatctcaagttcctcccacaaaatcttcaactcatggtagaaaga-agtaacagacttagaatcttgttacgaagagtaaatttcttgcattt 196  Q
    |||||||||| | ||||||||||||||||||||||||||||  ||| ||||| ||||| ||  || |||||||||| ||| |  ||||||||||||||      
T  19474312 gcatgtaaatatgaagttcctcccacaaaatcttcaactcagagta-aaagatagtaatagttttggaatcttgttgcgatgcataaatttcttgcatga 19474410  T
Q  197 attcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattga 296  Q
     ||||||||||| |||||||| ||| |||| ||| |  || ||||||||||||||||||||||| || | ||||||||| |  || ||||||| ||||||    
T  19474411 gttcagaaattcttaccaaatcaccatgtgaaaagcgttcattcaaatcattccaaacatcacaggcgttttccatgaagatgatggattgtgcaattga 19474510  T
Q  297 aggagaggctgaattcacaatccaagagt 325  Q
    ||||||  | |||||||| ||||| ||||    
T  19474511 aggagacacagaattcacgatccatgagt 19474539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 428
Target Start/End: Complemental strand, 37190602 - 37190315
Alignment:
Q  141 gtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattcagaaattcgtaccaaattaccttgtgcaaaactctccttc 240  Q
    |||||||  ||||||||| || ||||||||||   |||| || |||||||||||   ||||||||| || ||||||| |||||| |||||||  |||||     
T  37190602 gtagaaattagtaacagattttgaatcttgttgtaaagaatagatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaacgttcctta 37190503  T
Q  241 aaatcattccaaacatcacat-gcatattccatgaaaacaattgattgtgtaattgaaggagaggctgaattcacaatccaagagtaaactaacatatca 339  Q
    | ||||||||| ||||| ||| || | ||||||||||||||| ||||| | |||||||| |    |||||||||  ||||| |||| ||  | ||||| |    
T  37190502 agatcattccacacatc-catggcgttttccatgaaaacaatagattgagaaattgaagaatctactgaattcaagatccatgagtgaatcagcatatta 37190404  T
Q  340 cagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccatcgacaaattcatacttcatttttccccc 428  Q
    || |||||||| ||| |||||| ||||||||| |  ||  |||| |||  ||| |||||||| ||||||||| ||||||||||||||||    
T  37190403 caccgattccaagcacgaaaagaaggatcaaacgaatctgtaaccggagaaatagttccatcaacaaattcaaacttcatttttccccc 37190315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 141 - 428
Target Start/End: Complemental strand, 33458165 - 33457878
Alignment:
Q  141 gtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattcagaaattcgtaccaaattaccttgtgcaaaactctccttc 240  Q
    |||||||  ||||||||| || ||||||||||    ||| ||||||||||||||   ||||||||| || ||||||| |||||| |||||||  |||||     
T  33458165 gtagaaattagtaacagattttgaatcttgttgtacagaataaatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaacgttcctta 33458066  T
Q  241 aaatcattccaaacatcacatg-catattccatgaaaacaattgattgtgtaattgaaggagaggctgaattcacaatccaagagtaaactaacatatca 339  Q
    | ||||||||| ||||| |||| | | |||||||||||| || ||||| | ||||||||||    |||||||||  ||||| |||| ||  ||||||| |    
T  33458065 agatcattccacacatc-catggcgttttccatgaaaactatagattgagaaattgaaggatctactgaattcaagatccatgagtgaatcaacatatta 33457967  T
Q  340 cagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccatcgacaaattcatacttcatttttccccc 428  Q
    || |||||||| ||| |||||| ||||||||| |  ||  |||| ||| |||| |||||||| ||||||||| ||||||||||||||||    
T  33457966 caccgattccaagcacgaaaagaaggatcaaacgaatctgtaaccggaggaatagttccatcaacaaattcaaacttcatttttccccc 33457878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 428
Target Start/End: Complemental strand, 34822323 - 34822036
Alignment:
Q  141 gtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcatttattcagaaattcgtaccaaattaccttgtgcaaaactctccttc 240  Q
    |||||||  ||||||||| || ||||||||||   |||| || |||||||||||   ||||||||| || ||||||| |||||| |||||||  |||||     
T  34822323 gtagaaattagtaacagattttgaatcttgttgtaaagaatagatttcttgcataagttcagaaatacgaaccaaatcaccttgagcaaaacgttcctta 34822224  T
Q  241 aaatcattccaaacatcacat-gcatattccatgaaaacaattgattgtgtaattgaaggagaggctgaattcacaatccaagagtaaactaacatatca 339  Q
    | ||||||||| ||||| ||| || | ||||||||||||||| ||||| | |||||||| |    |||||||||  ||||| |||| ||  | ||||| |    
T  34822223 agatcattccacacatc-catggcgttttccatgaaaacaatagattgagaaattgaagaatctactgaattcaagatccatgagtgaatcagcatatta 34822125  T
Q  340 cagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgttccatcgacaaattcatacttcatttttccccc 428  Q
    || |||||||| ||| |||||| ||||||||| |  ||  |||| |||  ||| |||||||| ||||||||| ||||||||||||||||    
T  34822124 caccgattccaagcacgaaaagaaggatcaaacgaatctgtaaccggagaaatagttccatcaacaaattcaaacttcatttttccccc 34822036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 176 - 325
Target Start/End: Original strand, 25422691 - 25422840
Alignment:
Q  176 aagagtaaatttcttgcatttattcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaa 275  Q
    |||||||||| ||||||||  ||||||| |||| |||||||| ||||||||| || |  |||||||||||   ||||||||||||||||| |||||||||    
T  25422691 aagagtaaatctcttgcatcaattcagagattcttaccaaatcaccttgtgcgaatcgttccttcaaatccacccaaacatcacatgcattttccatgaa 25422790  T
Q  276 aacaattgattgtgtaattgaaggagaggctgaattcacaatccaagagt 325  Q
    ||| || ||||| | ||||||||| ||  | ||||||||||  |||||||    
T  25422791 aacgatagattgagcaattgaaggtgaaaccgaattcacaagtcaagagt 25422840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 2984876 - 2984749
Alignment:
Q  6 aaacctgattgcataaatcaaagtgtgattgtgactagcatttctcataaaatcacaagaaaaacgtaccctataagtgcagttaggtaaatgcatgtaa 105  Q
    |||||| |||||||| | |||||||||| | || |||||||| | ||| || ||||||||| ||||||| |||||    ||||| || | | ||||||||    
T  2984876 aaacctaattgcatagagcaaagtgtgactttgtctagcattgcgcatgaattcacaagaacaacgtactctatagacacagttgggaacaagcatgtaa 2984777  T
Q  106 atctcaagttcctcccacaaaatcttca 133  Q
    |||||||  |||||||||||||||||||    
T  2984776 atctcaaactcctcccacaaaatcttca 2984749  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 335
Target Start/End: Complemental strand, 2984727 - 2984633
Alignment:
Q  241 aaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaaggagaggctgaattcacaatccaagagtaaactaacat 335  Q
    ||||| |||||||||||||| |  | ||||||||| | ||| || |||| ||||||||||||     |||||||||||||||||| |||||||||    
T  2984727 aaatcgttccaaacatcacaagtgttttccatgaagataatggactgtgcaattgaaggagatataaaattcacaatccaagagtgaactaacat 2984633  T

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Target: scaffold0779 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 332
Target Start/End: Complemental strand, 2342 - 2208
Alignment:
Q  198 ttcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaa 297  Q
    ||||||||||| |||||||| |||||| | ||| |  | ||||| |||||||||||||||||| |||| |||||||||||  || ||||||| |||||||    
T  2342 ttcagaaattcttaccaaatcaccttgagaaaatcgtttcttcagatcattccaaacatcacacgcattttccatgaaaattatagattgtgcaattgaa 2243  T
Q  298 ggagaggctgaattcacaatccaagagtaaactaa 332  Q
    | |||  | ||||| |||||||| |||| ||||||    
T  2242 gaagatacagaattgacaatccatgagtgaactaa 2208  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 320
Target Start/End: Original strand, 18503063 - 18503285
Alignment:
Q  98 gcatgtaaatctcaagttcctcccacaaaatcttcaactcatggtagaaagaagtaacagacttagaatcttgttacgaagagtaaatttcttgcattta 197  Q
    ||||||| ||||||||||| ||||| ||||||||||| |||  ||| |||  ||| ||||  || || ||||||| |   |  || |||||||||||       
T  18503063 gcatgtagatctcaagttcttcccataaaatcttcaattcagagtaaaaaatagttacagttttggattcttgttgcagtgcatagatttcttgcataag 18503162  T
Q  198 ttcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaa 297  Q
    ||||||||||| |||||||| |||||| | ||| |  ||||| | |||||||||||||||||| |||| |||||||||||  || ||||||| |||||||    
T  18503163 ttcagaaattcttaccaaatcaccttgagaaaatcgttcctttagatcattccaaacatcacacgcattttccatgaaaattatagattgtgcaattgaa 18503262  T
Q  298 ggagaggctgaattcacaatcca 320  Q
    | |||  | ||||| ||||||||    
T  18503263 gaagatacagaattgacaatcca 18503285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 26363221 - 26363355
Alignment:
Q  198 ttcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgcatattccatgaaaacaattgattgtgtaattgaa 297  Q
    ||||||||||| |||||||| |||||| | ||| |  ||||||| |||||||||||||||||| |||| |||||||||||  || ||||||| |||||||    
T  26363221 ttcagaaattcttaccaaatcaccttgagaaaatcgttccttcagatcattccaaacatcacacgcattttccatgaaaattatagattgtgcaattgaa 26363320  T
Q  298 ggagaggctgaattcacaatccaagagtaaactaa 332  Q
    | |||    ||||| |||||||| |||| ||||||    
T  26363321 gaagatatagaattgacaatccatgagtgaactaa 26363355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 424
Target Start/End: Original strand, 13752 - 13978
Alignment:
Q  198 ttcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatgca-tattccatgaaaacaattgattgtgtaattga 296  Q
    |||||||||||| ||||||| |||||| ||||| |  ||||| | || |||||| ||||| |||| | | ||||||||||||||| ||||| | | ||||    
T  13752 ttcagaaattcgaaccaaatcaccttgagcaaagcattccttgagataattccacacatc-catggagttttccatgaaaacaatagattgagaatttga 13850  T
Q  297 aggagaggctgaattcacaatccaagagtaaactaacatatcacagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgtt 396  Q
    ||||    |||||||||  ||||| |||| ||  | ||| |  || |||||||| ||| |||||| ||||||||| |  || || |||||| |||| ||     
T  13851 aggatctactgaattcaagatccatgagtgaatcagcatgttgcaccgattccaagcacgaaaagaaggatcaaaagaatctatgactggaggaatggtg 13950  T
Q  397 ccatcgacaaattcatacttcatttttc 424  Q
     |||| ||||||||||||||||||||||    
T  13951 tcatcaacaaattcatacttcatttttc 13978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 424
Target Start/End: Original strand, 22810 - 23036
Alignment:
Q  198 ttcagaaattcgtaccaaattaccttgtgcaaaactctccttcaaatcattccaaacatcacatg-catattccatgaaaacaattgattgtgtaattga 296  Q
    |||||||||||| ||||||| |||||| ||||| |  ||||| | || |||||| ||||| |||| | | ||||||| ||||||| ||||| | | ||||    
T  22810 ttcagaaattcgaaccaaatcaccttgagcaaagcattccttgagataattccacacatc-catggcgttttccatgcaaacaatagattgagaatttga 22908  T
Q  297 aggagaggctgaattcacaatccaagagtaaactaacatatcacagcgattccacgcatgaaaagtaggatcaaaggtgtcaataactggatgaattgtt 396  Q
    ||||    |||||||||  ||||| |||| ||  | ||| |  || |||||||| ||| |||||| ||||||||| |  || || |||||| |||| ||     
T  22909 aggatctactgaattcaagatccatgagtgaatcagcatgttgcaccgattccaagcacgaaaagaaggatcaaaagaatctatgactggaggaatggtg 23008  T
Q  397 ccatcgacaaattcatacttcatttttc 424  Q
     |||| ||||||||||||||||||||||    
T  23009 tcatcaacaaattcatacttcatttttc 23036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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