View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_14 (Length: 409)
Name: NF15908_low_14
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_14 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 41309566 - 41309950
Alignment:
| Q |
20 |
ctgcattaggccctgcataaataacattaaatttaattcgaaacacacctggagaatgccacaccatctgataaatttcatgttaactccatatacgagt |
119 |
Q |
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| T |
41309566 |
ctgcattaggccctgcataaataacattaaatttaattcgaaacacacctggagaatgccacaccatctgataaatttcatgttaactccatatacgagt |
41309665 |
T |
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| Q |
120 |
tcatcaggggcatgagagtatccacctatagtttgttacattacatagtcaaatatattagtgcaccaagatttattcattgatagattatatttagtga |
219 |
Q |
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| T |
41309666 |
tcatcaggggcatgagagtatccacctatagtttgttacattacatagtcaaatatattagtgcaccaagatttattcatcgatagattatatttagtga |
41309765 |
T |
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| Q |
220 |
gtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttgacggcataatttatcttgggaatt |
319 |
Q |
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| T |
41309766 |
gtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttcacggtataatttatcttgggaatt |
41309865 |
T |
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| Q |
320 |
ttctgcgaagaacatagaggatactacactagttatattgataattgcaatttaaatggaaacaggacagagagcagaggatggaaaact |
409 |
Q |
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| T |
41309866 |
ttctgcgaagaacatagaggat-----actagttatattgataattgcaatttaaatggaaacaggacagagagcagaggatggaaaact |
41309950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 41324452 - 41324557
Alignment:
| Q |
208 |
tatatttagtgagtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttgacggcataattt |
307 |
Q |
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| T |
41324452 |
tatatatagtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatctttttcacagcatatttt |
41324551 |
T |
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| Q |
308 |
atcttg |
313 |
Q |
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| T |
41324552 |
atcttg |
41324557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 41324235 - 41324282
Alignment:
| Q |
66 |
acctggagaatgccacaccatctgataaatttcatgttaactccatat |
113 |
Q |
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| T |
41324235 |
acctgtagaatgccacaccatctaataaatttcatgtcgactccatat |
41324282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 27657378 - 27657289
Alignment:
| Q |
66 |
acctggagaatgccacaccatctgataaatttcatgttaactccatatacgagttcatcaggggcatgagagtatccacctatagtttgt |
155 |
Q |
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| T |
27657378 |
acctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagagatcatcaggggcatgtgaatatccacctgcagtttgt |
27657289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 27656779 - 27656719
Alignment:
| Q |
234 |
gtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttctt |
294 |
Q |
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| T |
27656779 |
gtttaccttgcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatcttctt |
27656719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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