View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_16 (Length: 390)

Name: NF15908_low_16
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_16
NF15908_low_16
[»] chr8 (1 HSPs)
chr8 (17-390)||(25192006-25192379)
[»] scaffold0147 (1 HSPs)
scaffold0147 (17-297)||(8226-8503)
[»] chr7 (2 HSPs)
chr7 (17-165)||(19205199-19205347)
chr7 (196-292)||(19205384-19205480)
[»] chr5 (2 HSPs)
chr5 (331-361)||(21194063-21194093)
chr5 (329-361)||(22423762-22423794)
[»] chr4 (4 HSPs)
chr4 (361-390)||(8423721-8423750)
chr4 (329-361)||(715543-715575)
chr4 (329-361)||(752869-752901)
chr4 (330-362)||(28470453-28470485)
[»] chr3 (2 HSPs)
chr3 (328-361)||(8842418-8842451)
chr3 (329-361)||(20503554-20503586)
[»] chr1 (2 HSPs)
chr1 (324-361)||(35702535-35702572)
chr1 (331-359)||(5898206-5898234)
[»] scaffold0793 (1 HSPs)
scaffold0793 (329-361)||(4819-4851)
[»] scaffold0018 (1 HSPs)
scaffold0018 (342-390)||(192233-192281)
[»] chr2 (1 HSPs)
chr2 (329-361)||(26769611-26769643)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 25192006 - 25192379
Alignment:
Q  17 tggttgcattgatccattttttgcaagttttggtttggagaccaaaatcattgagagcaaagctacataggcagggtattcatggcccttctcctcactt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25192006 tggttgcattgatccattttttgcaagttttggtttggagaccaaaatcattgagagcaaagctacataggcagggtattcatggcccttctcctcactt 25192105  T
Q  117 ttacttcggtaatatccaagaaataaaaacccttttacaccaacaacaacaattatctgtcaagcataaagaagaaaaagaagatatttgtgatactata 216  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  25192106 ttacttgggtaatatccaagaaatgaagacccttttacaccaacaacaacaattatctctcaagcataaagaagaaaaagaagatatttgcgatactata 25192205  T
Q  217 tctcatagctggacatcaagcttgttccctcatattcagaaatggagaagtcaatatggttaactactctctcctttctcactatcaatatatcttttaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  25192206 tctcatagctggacatcaagcttgttccctcatattcagaaatggagaagtcaatatggttaactactgtctcctttatcactatcaatatatcttttaa 25192305  T
Q  317 tgtttaattcttatctataaagcacggacactcctcggattaggcaccgacatttataattacactgaattatg 390  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  25192306 tgtttaattcttatctataaagtacggatactcctcggattaggcaccgacacttataattatactgaattatg 25192379  T

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Target: scaffold0147 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 8226 - 8503
Alignment:
Q  17 tggttgcattgatccattttttgcaagttttggtttggagaccaaaatcattgagagcaaagctacataggcagggtattcatggcccttctcctcactt 116  Q
    ||||| ||||||||||||||||| | |||||| ||| |||||||| |||| | ||||||||||| |||||||| |||||| |||| ||||||||||| ||    
T  8226 tggtttcattgatccattttttgaatgttttgattttgagaccaagatcactaagagcaaagcttcataggcaaggtattgatggtccttctcctcattt 8325  T
Q  117 ttacttcggtaatatccaagaaataaaaacccttttacaccaacaacaacaattatct-gtcaagcataaagaagaaaaagaagatatttgtgatactat 215  Q
     ||||| ||||| ||| ||||||| || |||||||||| ||||||||||    | ||  ||||| || ||| || || ||||| ||  || || | ||||    
T  8326 ctactttggtaacatcaaagaaatgaagacccttttactccaacaacaa----tctcaagtcaaacaaaaaaaacaagaagaacatggttttgtttctat 8421  T
Q  216 atctcatagctggacatcaagcttgttccctcatattcagaaatggagaagtcaatatggttaactactctctcctttctca 297  Q
    |||||||||||||||  |||  ||| ||||||||||||| || |||| ||  ||||||||| ||||||| | |||| |||||    
T  8422 atctcatagctggactacaactttgctccctcatattcacaagtggacaaaccaatatggtcaactactttgtcctctctca 8503  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 19205199 - 19205347
Alignment:
Q  17 tggttgcattgatccattttttgcaagttttggtttggagaccaaaatcattgagagcaaagctacataggcagggtattcatggcccttctcctcactt 116  Q
    |||| ||| ||||||||||||| || ||||| |||| ||||| || |||||| ||||||||||| ||||| |||||||||||||| ||||||||| | ||    
T  19205199 tggtggcactgatccattttttacatgttttagttttgagactaagatcattaagagcaaagcttcatagacagggtattcatggaccttctcctgattt 19205298  T
Q  117 ttacttcggtaatatccaagaaataaaaacccttttacaccaacaacaa 165  Q
    |||||| ||||||||  |||| || || || ||||||| ||||||||||    
T  19205299 ttactttggtaatattaaagagatgaagacacttttactccaacaacaa 19205347  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 19205384 - 19205480
Alignment:
Q  196 gaagatatttgtgatactatatctcatagctggacatcaagcttgttccctcatattcagaaatggagaagtcaatatggttaactactctctcctt 292  Q
    |||||| |||||| | ||||||||||||| ||||| ||||   | || ||||||||||| || |||||||  ||||||||| ||||||| |||||||    
T  19205384 gaagatgtttgtgcttctatatctcatagttggacttcaactgtttttcctcatattcacaagtggagaaaacaatatggtaaactactttctcctt 19205480  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 361
Target Start/End: Original strand, 21194063 - 21194093
Alignment:
Q  331 ctataaagcacggacactcctcggattaggc 361  Q
    |||||||||||||||||||||||||||||||    
T  21194063 ctataaagcacggacactcctcggattaggc 21194093  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 22423762 - 22423794
Alignment:
Q  329 atctataaagcacggacactcctcggattaggc 361  Q
    |||||| ||||||||||||||||||||||||||    
T  22423762 atctatgaagcacggacactcctcggattaggc 22423794  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 390
Target Start/End: Original strand, 8423721 - 8423750
Alignment:
Q  361 caccgacatttataattacactgaattatg 390  Q
    ||||||||||||||||||||||||||||||    
T  8423721 caccgacatttataattacactgaattatg 8423750  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 715543 - 715575
Alignment:
Q  329 atctataaagcacggacactcctcggattaggc 361  Q
    |||||| ||||||||||||||||||||||||||    
T  715543 atctatgaagcacggacactcctcggattaggc 715575  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 752869 - 752901
Alignment:
Q  329 atctataaagcacggacactcctcggattaggc 361  Q
    |||||| ||||||||||||||||||||||||||    
T  752869 atctatgaagcacggacactcctcggattaggc 752901  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 28470485 - 28470453
Alignment:
Q  330 tctataaagcacggacactcctcggattaggca 362  Q
    ||||| |||||||||||||||||||||||||||    
T  28470485 tctatgaagcacggacactcctcggattaggca 28470453  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 8842451 - 8842418
Alignment:
Q  328 tatctataaagcacggacactcctcggattaggc 361  Q
    ||||||| ||||||||||||||||||||||||||    
T  8842451 tatctatgaagcacggacactcctcggattaggc 8842418  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 20503586 - 20503554
Alignment:
Q  329 atctataaagcacggacactcctcggattaggc 361  Q
    |||||| ||||||||||||||||||||||||||    
T  20503586 atctatgaagcacggacactcctcggattaggc 20503554  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 35702535 - 35702572
Alignment:
Q  324 ttcttatctataaagcacggacactcctcggattaggc 361  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  35702535 ttcttaactatgaagcacggacactcctcggattaggc 35702572  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 359
Target Start/End: Original strand, 5898206 - 5898234
Alignment:
Q  331 ctataaagcacggacactcctcggattag 359  Q
    |||||||||||||||||||||||||||||    
T  5898206 ctataaagcacggacactcctcggattag 5898234  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 4819 - 4851
Alignment:
Q  329 atctataaagcacggacactcctcggattaggc 361  Q
    |||||| ||||||||||||||||||||||||||    
T  4819 atctatgaagcacggacactcctcggattaggc 4851  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 192233 - 192281
Alignment:
Q  342 ggacactcctcggattaggcaccgacatttataattacactgaattatg 390  Q
    ||||||||||||| |||||||| |||| || ||||||||| ||||||||    
T  192233 ggacactcctcgggttaggcacagacacttgtaattacaccgaattatg 192281  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 26769643 - 26769611
Alignment:
Q  329 atctataaagcacggacactcctcggattaggc 361  Q
    |||||| ||||||||||||||||||||||||||    
T  26769643 atctatgaagcacggacactcctcggattaggc 26769611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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