View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15908_low_2 (Length: 618)
Name: NF15908_low_2
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 40 - 597
Target Start/End: Complemental strand, 12794582 - 12794025
Alignment:
| Q |
40 |
acatgaaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgttt |
139 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12794582 |
acataaaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacataaaacaaaaactaacgacttacaaaatcaagaatagtgttt |
12794483 |
T |
|
| Q |
140 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12794482 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
12794383 |
T |
|
| Q |
240 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12794382 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
12794283 |
T |
|
| Q |
340 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12794282 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
12794183 |
T |
|
| Q |
440 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12794182 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
12794083 |
T |
|
| Q |
540 |
tggggaatccttgtttcaatgttccgtatgcgaagattagatgcggtttcggtttcgc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12794082 |
tggggaatccttgtttcaatgttccgtatgcgaagattagatgcggtttcgctttcgc |
12794025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 40 - 597
Target Start/End: Complemental strand, 12731790 - 12731235
Alignment:
| Q |
40 |
acatgaaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgttt |
139 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
12731790 |
acataaaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacacaa--caaaaactaacgacttacaaaatcaagaatagtgttt |
12731693 |
T |
|
| Q |
140 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12731692 |
ctacaaccaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccc |
12731593 |
T |
|
| Q |
240 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12731592 |
caaaacttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacacc |
12731493 |
T |
|
| Q |
340 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12731492 |
ttcgaactcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtatt |
12731393 |
T |
|
| Q |
440 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12731392 |
ccgtggggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggt |
12731293 |
T |
|
| Q |
540 |
tggggaatccttgtttcaatgttccgtatgcgaagattagatgcggtttcggtttcgc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12731292 |
tggggaatccttgtttcaatgttccgtatgcgaagattagatgcggtttcgctttcgc |
12731235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 12739745 - 12739682
Alignment:
| Q |
145 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaa |
209 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||| ||| |||| |||||||| | |||||||| |
|
|
| T |
12739745 |
accaggtatatcctctttcctcacatactccttcgcttcactctc-ccatactccatcaacccaa |
12739682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 12802568 - 12802505
Alignment:
| Q |
145 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaa |
209 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||| ||| |||| |||||||| | |||||||| |
|
|
| T |
12802568 |
accaggtatatcctctttcctcacatactccttcgcttcactctc-ccatactccatcaacccaa |
12802505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University