View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_22 (Length: 340)

Name: NF15908_low_22
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_22
NF15908_low_22
[»] chr3 (2 HSPs)
chr3 (229-340)||(46246956-46247067)
chr3 (196-288)||(46247067-46247159)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 46247067 - 46246956
Alignment:
Q  229 aatatatggtcaatttatttattttttgacaaaaataaatggtcaatttataattgtatatcatgttgcaaattgtgcaattatggttagttaggtagtt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46247067 aatatatggtcaatttatttattttttgacaaaaataaatggtcaatttataattgtatatcatgttgcaaattgtgcaattatggttagttaggtagtt 46246968  T
Q  329 gaattaaccaca 340  Q
    ||||||||||||    
T  46246967 gaattaaccaca 46246956  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 46247159 - 46247067
Alignment:
Q  196 taaaataatgcaaagttgtggttaattcatttaaatatatggtcaatttatttattttttgacaaaaataaatggtcaatttataattgtata 288  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46247159 taaaataatgcaaaattgtggttaattcatttgaatatatggtcaatttatttattttttgacaaaaataaatggtcaatttataattgtata 46247067  T

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