View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15908_low_24 (Length: 307)
Name: NF15908_low_24
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 47160774 - 47161049
Alignment:
| Q |
17 |
atatacaacattcacataactcggtggacctgattttcccttcttgaaccaaaaagatatatatccatgaaacttcaagcatttgtccttgatgtatcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47160774 |
atatacaacattcacataactcggtggacctgattttcccttcttgaaccaaaaagatat----ccatgaaacttcaagcatttgtccttgatgtatcca |
47160869 |
T |
|
| Q |
117 |
aaaataccacattgagtgcaaagaggactatctttctttctagcttttggattggaactagcaaattcttgacatgcaacagtaacaatatcgatttcga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47160870 |
aaaataccacattgagtgcaaagaggactatctttctttctagcttttggattggaactagcaaattcttgacatgcaacagtaacaatatcgatttcga |
47160969 |
T |
|
| Q |
217 |
tggctcgttgtttttattcttggatcacaaaagaaaaatgtggctaatggaaggaaagtaatccataagtagtattatct |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47160970 |
tggctcgttgtttttattcttggatcacaaaagaaaaatgtggctaatggaaggaaagtaatccataagtagtagtatct |
47161049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University