View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_27 (Length: 298)
Name: NF15908_low_27
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 3090760 - 3091025
Alignment:
| Q |
15 |
catagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctttggtgttgcactttctgatccatctcctt |
114 |
Q |
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| T |
3090760 |
catagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctttggtgttgcactttctgatccatctcctt |
3090859 |
T |
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| Q |
115 |
cctctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcg |
214 |
Q |
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| T |
3090860 |
cctctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcg |
3090959 |
T |
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| Q |
215 |
tgcaagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaagacggtcaggagt |
280 |
Q |
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| T |
3090960 |
tgcaagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaagacggtcaggagt |
3091025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 3082404 - 3082653
Alignment:
| Q |
15 |
catagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctttggtgttgcactttctgatccatctcctt |
114 |
Q |
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| T |
3082404 |
catagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctatggtgttccactctctgatacatctcctt |
3082503 |
T |
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| Q |
115 |
cctctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgccggcttctatactcg |
214 |
Q |
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| T |
3082504 |
cttctcctgctcaacgattcatttctgaagatggtgttattaattcaagagctcgtgttctaggtggtggaagttgtttgaatgctggcttctacactcg |
3082603 |
T |
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| Q |
215 |
tgcaagccctcgctacgtaaggtatgtaacacaaaaataaaccattctctcaag |
268 |
Q |
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| T |
3082604 |
tgcaagccctcgctatgtaag----gtaacacaaaaataaactattctttcaag |
3082653 |
T |
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