View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_3 (Length: 533)
Name: NF15908_low_3
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Original strand, 32138572 - 32139081
Alignment:
| Q |
8 |
agcagaacctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatctgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccg |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32138572 |
agcagaagctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatccgagtcaaaaacaacgttgggaagaaaaccgtaaggtccatccccg |
32138671 |
T |
|
| Q |
108 |
aataaaacaactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32138672 |
aataaaacaactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttc |
32138771 |
T |
|
| Q |
208 |
caagaccagccataccagaagcaccacttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgg |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32138772 |
caagaccagccataccagaagcaccagttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgg |
32138871 |
T |
|
| Q |
308 |
gttgaagccattagaggattggattgataaaacatcttcagcaagttcaccgctggtggcggtgtgggtaatgctattgtccggggtgacaccacaggtg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32138872 |
gttgaagccattagaggattggattgataaaacatcttcagcaagttcaccgctggtggcggtgtgggtaatgctattgtccggggtgacaccacaagtg |
32138971 |
T |
|
| Q |
408 |
ttgttgttgcagccaggttttggtgatgagaaacaatcaccacagccgtcggattttgcgagggagcattgggctgaacggcagcgtgcagggcggtatg |
507 |
Q |
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| T |
32138972 |
ttgttgttgcagccaggttttggtgatgagaaacaatcaccacagccgtcggaatttgcaagggagcattgggctgaacggcagcgtgcagggcggtatg |
32139071 |
T |
|
| Q |
508 |
tggaagaaat |
517 |
Q |
| |
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|||||||||| |
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| T |
32139072 |
tggaagaaat |
32139081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Original strand, 32147970 - 32148471
Alignment:
| Q |
16 |
ctgtgctaacaggattgatcaaaagcggtgtatatgtaagcgaatctgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaac |
115 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||| || || | ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
32147970 |
ctgtgctaaagggattgatcaaaagcggtgtgtatgtgagtgacttagaatcaaaaacgacgttggggagaaaaccgtaaggtccatccccgaataaaac |
32148069 |
T |
|
| Q |
116 |
aactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttccaagacca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
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| T |
32148070 |
aactccctttgaagaggaaagacaaatagcgaattttttagcgaagctaaaagccgaagctaattgagatggaagagctaatttgtttcttccaagacca |
32148169 |
T |
|
| Q |
216 |
gccataccagaagcaccacttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgggttgaagc |
315 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32148170 |
gccataccagaagcaccacttgcaagtccttctagtaagaaagttcgtgcacatgagaataggaagcgtgaaaccatgacattttgtcctgggttgaagc |
32148269 |
T |
|
| Q |
316 |
cattagaggattggattgataaaacatcttcagcaagttcaccgctggtggcggtgtgggtaatgctattgtccggggtgacaccacaggtgttgttgtt |
415 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | ||||||| |||||| | |||| |||| |||||||||||||| |
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| T |
32148270 |
cattagaggattggattgataaaatatcttcagccagttcaccgctcatggcgctctgggtaacgctattccctggggcaacactgcaggtgttgttgtt |
32148369 |
T |
|
| Q |
416 |
gcagccaggttttggtgatgagaaacaatcaccacagccgtcggattttgcgagggagcattgggctgaacggcagcgtgcagggcggtatgtggaagaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| |||| || |||||||||||||| || || || |||||||| ||||||||||| ||| |
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| T |
32148370 |
gcagccaggttttggtgatgagaaacaaacaccacagtcgtcgaatttggcaagggagcattgggcagagcgacaccgtgcaggacggtatgtggaggaa |
32148469 |
T |
|
| Q |
516 |
at |
517 |
Q |
| |
|
|| |
|
|
| T |
32148470 |
at |
32148471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 125 - 511
Target Start/End: Original strand, 32126906 - 32127289
Alignment:
| Q |
125 |
tgaagaggaaagacaaatagcgaattttctagcgaagctaaaagccgaagctagttgagatggaagagctattttggttcttccaagaccagccatacca |
224 |
Q |
| |
|
|||||| |||| ||||| ||| |||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
32126906 |
tgaagaagaaaaacaaaaagcaaattttcttttgaaaataaaagcagaagctagttgagatggaagagcgattttggttcttccaagaccagccatgcca |
32127005 |
T |
|
| Q |
225 |
gaagcaccacttgcaagtccttttagtaagaaagttggtgcacatgagaataggaagcgtgaaaccacgacattttgtcctgggttgaagccattagagg |
324 |
Q |
| |
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|||||||||| |||||||||| || ||| | |||||||| ||||| ||||| ||||||||||| |||||||||||||||| |||||| || ||| | |
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| T |
32127006 |
gaagcaccacctgcaagtcctcgtaataatgatgttggtgcgcatgaaaatagaaagcgtgaaacaacgacattttgtcctgtgttgaaaccgctagttg |
32127105 |
T |
|
| Q |
325 |
attggattgataaaacatcttcagcaagttcaccgctggtggcggtgtgggtaatgctattgtccggggtgacaccacaggtgttgttgttgcagccagg |
424 |
Q |
| |
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||||||| |||||||| |||||||| || || || | || ||| |||| || ||| | |||||||| ||| ||||| | ||||||||||||| || |
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| T |
32127106 |
attggatggataaaacgtcttcagctagatcgccacgagtagcgctgtgtgtgatggtgttgtccggaatgaggccacaag---tgttgttgcagccggg |
32127202 |
T |
|
| Q |
425 |
ttttggtgatgagaaacaatcaccacagccgtcggattttgcgagggagcattgggctgaacggcagcgtgcagggcggtatgtgga |
511 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || |||| ||| |||||||||||||||| |
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| T |
32127203 |
ttttggtgatgagaaacaatcaccacagctatcagatttggcgagggagcattgggcggaggggcaccgtacagggcggtatgtgga |
32127289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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