View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_31 (Length: 262)
Name: NF15908_low_31
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2307601 - 2307846
Alignment:
| Q |
1 |
acaaactagatcattgaagcattattagatttataagattgaatgtgccaagtgcaaacaaaatacatgtactgtgctcttctttaattggagataatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307601 |
acaaactagatcattgaagcattattagatttataagattgaatgtgccaagtgcaaacaaaatacatgtactgtgctcttctttaattggagataatag |
2307700 |
T |
|
| Q |
101 |
ataccaatgattnnnnnnnctagaagtgtattcaagcctggaatcattaacctctaaagagactatttagttttaaaaactaaaagaacacagacataaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307701 |
ataccaatgattaaaaaaactagaagtgtattcaagcctggaatcattaacctctaaagagactatttagttttaaaaactaaaagaacacagacataaa |
2307800 |
T |
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| Q |
201 |
caaaatcattcagagaggggggaaagcagtaaagactgcaaaatct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307801 |
caaaatcattcagagaggggggaaagcagtaaagactgcaaaatct |
2307846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2316801 - 2317047
Alignment:
| Q |
1 |
acaaactagatcattgaagcattattagatttataagattgaatgtgccaagtgcaaacaaaatacatgtactgtgctcttctttaattggagataatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
2316801 |
acaaactagatcattgaagcattattagatttataagattgaatttgccaagtgcaaacaaaatacacgtactgttctcttctttaattggagataatag |
2316900 |
T |
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| Q |
101 |
ataccaatgattnnnnnnnctagaagtgtattcaagcctggaatcattaacctctaaagagactatttagttttaaaaact-aaaagaacacagacataa |
199 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
2316901 |
atgccaatgattaaaaaaactagaagtgtattcaagcctggaatcattaacgtctaaagagactatttagtgttaaagactaaaaagaacacagacataa |
2317000 |
T |
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| Q |
200 |
acaaaatcattcagagaggggggaaagcagtaaagactgcaaaatct |
246 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
2317001 |
acaaaatcattcagagaggggggaaagcagaaaagaccgcaaaatct |
2317047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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