View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_33 (Length: 256)

Name: NF15908_low_33
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_33
NF15908_low_33
[»] chr6 (3 HSPs)
chr6 (105-242)||(32154926-32155063)
chr6 (111-242)||(3377458-3377589)
chr6 (105-242)||(14608392-14608528)
[»] chr1 (5 HSPs)
chr1 (105-242)||(44209438-44209575)
chr1 (103-242)||(22388686-22388825)
chr1 (105-242)||(32814572-32814709)
chr1 (107-242)||(43214824-43214959)
chr1 (165-242)||(44209675-44209752)
[»] chr2 (9 HSPs)
chr2 (105-242)||(14252213-14252350)
chr2 (105-242)||(5607145-5607282)
chr2 (105-242)||(10317314-10317450)
chr2 (105-210)||(9758637-9758742)
chr2 (134-243)||(10315539-10315648)
chr2 (134-242)||(10316268-10316376)
chr2 (134-242)||(10316593-10316701)
chr2 (134-242)||(10316950-10317058)
chr2 (134-242)||(10315904-10316012)
[»] chr5 (6 HSPs)
chr5 (105-242)||(27341517-27341654)
chr5 (105-229)||(27188262-27188386)
chr5 (105-242)||(38424453-38424590)
chr5 (105-242)||(25455974-25456111)
chr5 (108-242)||(21362063-21362197)
chr5 (105-242)||(13544909-13545046)
[»] chr7 (5 HSPs)
chr7 (105-239)||(29644490-29644624)
chr7 (105-242)||(21386851-21386988)
chr7 (105-242)||(30022741-30022878)
chr7 (140-242)||(33696963-33697065)
chr7 (109-152)||(2372913-2372956)
[»] chr4 (5 HSPs)
chr4 (108-242)||(45764979-45765113)
chr4 (105-242)||(35194486-35194622)
chr4 (105-242)||(12595007-12595146)
chr4 (105-242)||(21857962-21858100)
chr4 (105-242)||(21913825-21913963)
[»] scaffold0140 (1 HSPs)
scaffold0140 (105-242)||(4846-4978)
[»] chr3 (1 HSPs)
chr3 (108-242)||(9665956-9666090)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 32155063 - 32154926
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32155063 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 32154964  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||| ||  ||||||||||||||||||||||||||||||    
T  32154963 gaaagatgtgatggtggatgtgaggcttgtggtgatat 32154926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 3377458 - 3377589
Alignment:
Q  111 gaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaagga 210  Q
    ||||||| |||||||||||||||||||||||||| | |||||||| || ||||||||||||||  ||||||||||||||||  |||| ||||||||||||    
T  3377458 gaaatacattggtggagttgaggaaattcagaaattacatgatgataaaaagcttgagaaattatttgattgttgtgaaagagttgacgacattgaagga 3377557  T
Q  211 gatgatggtggatgtgaggcttgtggtgatat 242  Q
    | ||||||||||||||||||||||||||||||    
T  3377558 ggtgatggtggatgtgaggcttgtggtgatat 3377589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 14608392 - 14608528
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| || |||||||| |||||||||||| ||||  ||||||||||||| ||||||||||||| |||| ||||||||||||| |  |||||    
T  14608392 tgaaaagaaatacatttgtggagtt-aggaaattcagagactttgtgatgacaagaagtttgagaaattgctcgattattgtgaaaggattaacaacatt 14608490  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  14608491 gaaggaggtgatggtggatgtgaggcttgtggtgatat 14608528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 44209438 - 44209575
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44209438 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 44209537  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  44209538 gaaggaggtgatggtggatgcgaggcttgtggtgatat 44209575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 22388686 - 22388825
Alignment:
Q  103 agtgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgaca 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22388686 agtgaaaagaaatacattggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgaca 22388785  T
Q  203 ttgaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||||| |||| ||||||||| || ||||||||||||    
T  22388786 ttgaaggaggtgatagtggatgtggggtttgtggtgatat 22388825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 32814572 - 32814709
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  32814572 tgaaaagaaatacattggtggagttgaggaaattcagaaatttcatgatgacaagaaacttgagaaattgtttgattgttgtgaaaggattgatgacatt 32814671  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  32814672 gaaggaggtgatggttgatgtgaggcttgtggtgatat 32814709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 107 - 242
Target Start/End: Original strand, 43214824 - 43214959
Alignment:
Q  107 aaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattga 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  43214824 aaaagaaatacattggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgtttgattgttgtgaaaggattgaggacattga 43214923  T
Q  207 aggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||| ||| ||||||||| | ||||||||||||||    
T  43214924 aggaggtgacggtggatgtaaagcttgtggtgatat 43214959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 44209675 - 44209752
Alignment:
Q  165 tgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  44209675 tgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggtgatggtggatgcgaggcttgtggtgatat 44209752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 14252213 - 14252350
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14252213 tgaaaagaaatacattggtggagttgaggaaattcaaaaacttcatgatgacaagaagcttgagaaattgcttgatcgttgtgaaaggattgatgacatt 14252312  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  14252313 gaaggaggtgatggtggatgtgaggcttgtggtgatat 14252350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 5607145 - 5607282
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5607145 tgaaaataaataagttggtggagttgaggaaattcagaaacttcatgataacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 5607244  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||  | |||||||||||||||| |||| ||||||||    
T  5607245 gaagacggtgatggtggatgtgagacttgcggtgatat 5607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 10317450 - 10317314
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  10317450 tgaaaagaagtacattggtggagttgagaaaattcagaaacttcatgatgacaaaaagcttgagaaattgcttgattgttgtgaaaggattgatggcatt 10317351  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||||||| |||||||| |||||||||    
T  10317350 gaaggaggtgatggtggat-tgaggcttatggtgatat 10317314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 9758637 - 9758742
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9758637 tgaaaagaaatacgttggtggagttgagaaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgatttttgtgaaaggattgatgacatt 9758736  T
Q  205 gaagga 210  Q
    ||||||    
T  9758737 gaagga 9758742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 10315648 - 10315539
Alignment:
Q  134 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatgtgaggcttg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||    
T  10315648 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattgatggcattgaaagaggtgatggtggatgtgaggcttg 10315549  T
Q  234 tggtgatatt 243  Q
    ||||||||||    
T  10315548 tggtgatatt 10315539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 10316376 - 10316268
Alignment:
Q  134 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatgtgaggcttg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  10316376 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggaggtgatggtggatgtgaggcttg 10316277  T
Q  234 tggtgatat 242  Q
    |||||||||    
T  10316276 tggtgatat 10316268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 10316701 - 10316593
Alignment:
Q  134 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatgtgaggcttg 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  10316701 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattactgtgaatggattgatggcattgaaggaggtgatggtggatgtgaggcttg 10316602  T
Q  234 tggtgatat 242  Q
    |||||||||    
T  10316601 tggtgatat 10316593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 10317058 - 10316950
Alignment:
Q  134 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatgtgaggcttg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||| ||||||||||||||||    
T  10317058 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggaggtgattgtggatgtgaggcttg 10316959  T
Q  234 tggtgatat 242  Q
    |||||||||    
T  10316958 tggtgatat 10316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 10316012 - 10315904
Alignment:
Q  134 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatgtgaggcttg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||  ||||| |||||||||| |||     
T  10316012 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggatgtgatgttggatgtgagactta 10315913  T
Q  234 tggtgatat 242  Q
    |||||||||    
T  10315912 tggtgatat 10315904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 27341517 - 27341654
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27341517 tgaaaagaaatacattggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatttatgacatt 27341616  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||| ||||||||||||||||||| ||||    
T  27341617 gaaggaggtgatgatggatgtgaggcttgtggtaatat 27341654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 27188262 - 27188386
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27188262 tgaaaagaaatacattggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattaatgacatt 27188361  T
Q  205 gaaggagatgatggtggatgtgagg 229  Q
    ||||||| |||||||||||||||||    
T  27188362 gaaggaggtgatggtggatgtgagg 27188386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 38424453 - 38424590
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  38424453 tgaaaagaaatacattggtggagttaaggaaattcagaaacttcatgttgacaagaagcttgagaaatcgcttttttgttgtgaaaggattgatgacatt 38424552  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  38424553 gaaggaggtgatggtggatgtgaggcttgtggtgatat 38424590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 25456111 - 25455974
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25456111 tgaaaagaaatacattggttgagttgaggaaattcagaaagttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatggcatt 25456012  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
     |||||| |||||||||||||||||  |||||||||||    
T  25456011 aaaggaggtgatggtggatgtgagggatgtggtgatat 25455974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 21362063 - 21362197
Alignment:
Q  108 aaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaa 207  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  21362063 aaagaaaaacattgctggagttgaggaaattcagaaacttcatgatgacaagaagcttgagtaattacttgattgttgtgaaaggattgacgacattgaa 21362162  T
Q  208 ggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    |||| |||| |||||||||||||||||||||||||    
T  21362163 ggaggtgatagtggatgtgaggcttgtggtgatat 21362197  T

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Target: chr5; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 13544909 - 13545046
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13544909 tgaaaaaaaatacattggtagagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 13545008  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    |||||||  |   |||||||||||||||| ||||||||    
T  13545009 gaaggaggaggcagtggatgtgaggcttgcggtgatat 13545046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 29644490 - 29644624
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29644490 tgaaaagaaatacattgatgaagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 29644589  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtga 239  Q
    ||||||||||||||||||| |||||||||| ||||    
T  29644590 gaaggagatgatggtggatttgaggcttgtcgtga 29644624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 21386988 - 21386851
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  21386988 tgaaaagaaatacattggtggagttgaggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattaatggcatt 21386889  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  21386888 gaaggaggtgatggtggatgtgaggcttgtggtgatat 21386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 30022741 - 30022878
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  30022741 tgaaatgaaatacattggtggagttgaggaaattcagaaacttcatgatgacaagaaacttgagaaattacttgattgttgtgaaaggattaatgacatt 30022840  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  30022841 gaaggaggtgatggtggatgtgaggcttgtggtgatat 30022878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 33697065 - 33696963
Alignment:
Q  140 agaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatgtgaggcttgtggtga 239  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||| |||||| ||||||||||||||||    
T  33697065 agaaacttcatgatgacaagaagcttgagaaattgtttgattgttgtgaaaggagtgatgacattgaagtaggtgaaggtggacgtgaggcttgtggtga 33696966  T
Q  240 tat 242  Q
    |||    
T  33696965 tat 33696963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 2372913 - 2372956
Alignment:
Q  109 aagaaatacgttggtggagttgaggaaattcagaaacttcatga 152  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||    
T  2372913 aagaattacattggtggagttgaggaaattgagaaacttcatga 2372956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 45765113 - 45764979
Alignment:
Q  108 aaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaa 207  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45765113 aaagaaatacattgttggagttgaggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattgatgacattgaa 45765014  T
Q  208 ggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    |||| |||||||||||||||||| |||||||||||    
T  45765013 ggaggtgatggtggatgtgaggcctgtggtgatat 45764979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 35194622 - 35194486
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||    
T  35194622 tgaaaagaaatacattggtggagttgaggaaattcagaaacttcatgatgacaagaagtttgagaaattgctttattgttgtgaaaggattgatgatatt 35194523  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  35194522 gaaggaggtgat-gtggatgtgaggcttgtggtgatat 35194486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 12595146 - 12595007
Alignment:
Q  105 tgaaaagaaatac---gttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgac 201  Q
    |||||||||||||   | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||     
T  12595146 tgaaaagaaatacattggtggtggagttgaggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttg-ttgttgtgaaaggattaatgaa 12595048  T
Q  202 attgaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  12595047 attgaaggaggtgatggtggatgtgaggcttgtggtgatat 12595007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 21857962 - 21858100
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgag-gaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacat 203  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  21857962 tgaaaagaaatacattggtggagttaaaagaaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatgacat 21858061  T
Q  204 tgaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    | |||||| ||||||||||||||||| ||||||||||||    
T  21858062 taaaggaggtgatggtggatgtgagggttgtggtgatat 21858100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 21913825 - 21913963
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgag-gaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacat 203  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  21913825 tgaaaagaaatacattggtggagttaaaagaaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatgacat 21913924  T
Q  204 tgaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    | |||||| ||||||||||||||||| ||||||||||||    
T  21913925 taaaggaggtgatggtggatgtgagggttgtggtgatat 21913963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 4978 - 4846
Alignment:
Q  105 tgaaaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacatt 204  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     |||    
T  4978 tgaaaagaaatacattggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgctgtgaaaggattg-----att 4884  T
Q  205 gaaggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4883 gaaggaggtgatggtggatgtgaggcttgtggtgatat 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 9666090 - 9665956
Alignment:
Q  108 aaagaaatacgttggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaa 207  Q
    |||||||||| ||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9666090 aaagaaatacattgttgtagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaa 9665991  T
Q  208 ggagatgatggtggatgtgaggcttgtggtgatat 242  Q
    |||| ||||||||||||||| ||||||||||||||    
T  9665990 ggaggtgatggtggatgtgaagcttgtggtgatat 9665956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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