View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_34 (Length: 255)
Name: NF15908_low_34
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1504166 - 1503950
Alignment:
| Q |
1 |
tggttaatgaactccaccatataataannnnnnnaggagaatcttgagtttgattcttgagtgaaatgaatatacgaaccaagctaagcacgtcaacgct |
100 |
Q |
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| T |
1504166 |
tggttaatgaactccaccatataacaaatttttcaggaaaatcttgagttcgatttttgagtgaaatgaatatacgaaccaagcg-----cgtcaacgct |
1504072 |
T |
|
| Q |
101 |
atttttgctnnnnnnnnnntagaatatacttttggaaacgacattgataattcatgaactgaattaaatcgagctgctgattcaactcaattccaaaatc |
200 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
1504071 |
atttttgctaaaagaaaaatagaatatacttttgaaaacgacattgataattcatgagctgaattaaatcgagctg---attcaactcaattccaaaatc |
1503975 |
T |
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| Q |
201 |
attagtcacattcatttcaattcaa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
1503974 |
attagtcacattcatttcaattcaa |
1503950 |
T |
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