View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_36 (Length: 245)
Name: NF15908_low_36
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26738603 - 26738361
Alignment:
| Q |
1 |
tctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26738603 |
tctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtac |
26738504 |
T |
|
| Q |
101 |
atgaaccttgtttcgtccaaaagagac---accaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatg |
197 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26738503 |
atgaaccttgtttcgtccaaaagagacaccaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatg |
26738404 |
T |
|
| Q |
198 |
gccctggagattcaagcgtttattggccagatcctttgcttct |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26738403 |
gccctggagattcaagcgtttattggccagatcctttgtttct |
26738361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26715364 - 26715125
Alignment:
| Q |
1 |
tctcattctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtac |
100 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26715364 |
tctcattttcagagaacataacaaaaatggtttcattttgtggcgaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtac |
26715265 |
T |
|
| Q |
101 |
atgaaccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26715264 |
atgaaccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggcc |
26715165 |
T |
|
| Q |
201 |
ctggagattcaagcgtttattggccagatcctttgcttct |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
26715164 |
ctggagattcaagcgtttattggccagatcctttgtttct |
26715125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 26693231 - 26693448
Alignment:
| Q |
8 |
ctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaacc |
107 |
Q |
| |
|
|||||||| || |||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
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| T |
26693231 |
ctcagagagcacaacaaaattggtttcgttttgtggcaaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggcacatgaaac |
26693330 |
T |
|
| Q |
108 |
ttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggccctggaga |
207 |
Q |
| |
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||||||| |||||||| | || ||| |||||||| ||| ||||| |||||||| || ||||| ||||| | ||||||||||||||||||||| || |
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| T |
26693331 |
ttgtttcctccaaaagtggcaacaaatattcctcgggcttttacaaacttttcttcgataacgacaatctcttgcgtcttctctatgatggccctcaagt |
26693430 |
T |
|
| Q |
208 |
ttcaagcgtttattggcc |
225 |
Q |
| |
|
|||||| |||||||||| |
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| T |
26693431 |
ttcaagtatttattggcc |
26693448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 26677013 - 26676786
Alignment:
| Q |
6 |
ttctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaa |
105 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26677013 |
ttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatgaa |
26676914 |
T |
|
| Q |
106 |
ccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggccctgga |
205 |
Q |
| |
|
|||||||| || ||||| |||| | ||||| || | | ||| |||||| | || |||| ||||||||| | |||||||||||||||||||| | |
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| T |
26676913 |
acttgtttcctcgaaaagtgacaacgtatattcatcagggttctataagcttcttttcaacaatgataatcttttaagtcttctctatgatggccctcaa |
26676814 |
T |
|
| Q |
206 |
gattcaagcgtttattggccagatcctt |
233 |
Q |
| |
|
| ||| || |||| ||||||||||||| |
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| T |
26676813 |
gtttctagtatttactggccagatcctt |
26676786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 26689077 - 26689273
Alignment:
| Q |
6 |
ttctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaa |
105 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26689077 |
ttctccgagaacgcaaaacaaatggtttcattttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatgaa |
26689176 |
T |
|
| Q |
106 |
ccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggccct |
202 |
Q |
| |
|
|||||||| || ||||| |||| | ||||| || | | ||| |||||| | || |||| ||||||||| | |||||||||||||||||||| |
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| T |
26689177 |
acttgtttcctcgaaaagtgacaacgtatattcatcagggttctataagcttcttttcaacaatgataatcttttaagtcttctctatgatggccct |
26689273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 26700186 - 26700050
Alignment:
| Q |
6 |
ttctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaa |
105 |
Q |
| |
|
|||| |||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||| ||| || |||||||||| |
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| T |
26700186 |
ttctgagagaacaagacataaatggtttcgttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaagatttgactgggtacatgaa |
26700087 |
T |
|
| Q |
106 |
ccttgtttcgtccaaaagagacaccaactattcctct |
142 |
Q |
| |
|
|||||||||||| | ||| | || ||||||||||||| |
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| T |
26700086 |
ccttgtttcgtcaagaagtgtcaacaactattcctct |
26700050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 26735343 - 26735190
Alignment:
| Q |
6 |
ttctcagagaacataacacaaatggtttcattttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaa |
105 |
Q |
| |
|
|||| |||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||| || | || |||||| |
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| T |
26735343 |
ttctgagagaacaagacataaatggtttcgttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaaaaattgattgagttcatgaa |
26735244 |
T |
|
| Q |
106 |
ccttgtttcgtccaaaagagacaccaactattcctctagctgctacaagctttt |
159 |
Q |
| |
|
||||||||||| ||||| | || ||||||||||||| | | |||||||||||| |
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|
| T |
26735243 |
ccttgtttcgttgaaaagtgtcaacaactattcctctggttcctacaagctttt |
26735190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 26745598 - 26745409
Alignment:
| Q |
38 |
ttgtggcaaagttttgattttccaacagataccctccttcccgatcaaagtttcacaaggtacatgaaccttgtttcgtccaaaagagacaccaactatt |
137 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| | || |||| || ||||| | | |||||| |
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|
| T |
26745598 |
ttgtggcagagttttgattccccaacagatactctccttcctgatcaaagtttcacaaggtacatgcaactcatttcctcaaaaagcaagaatgactatt |
26745499 |
T |
|
| Q |
138 |
cctctagctgctacaagcttttctttgacaacgataatcttctccgtcttctctatgatggccctggagattcaagcgtttattggccag |
227 |
Q |
| |
|
| ||| ||| |||||||||||| || || |||| ||||||||| ||||| |||| ||||| ||| || |||||| ||||| ||||||| |
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|
| T |
26745498 |
catctggcttctacaagcttttattcaactacgacaatcttctctgtcttatctacgatggacctcaagtttcaagagtttactggccag |
26745409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 21097288 - 21097332
Alignment:
| Q |
34 |
cattttgtggcaaagttttgattttccaacagataccctccttcc |
78 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||| |||||||| |
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|
| T |
21097288 |
cattttgtggcagagttttgactctccaacagatactctccttcc |
21097332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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