View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_4 (Length: 500)
Name: NF15908_low_4
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 483
Target Start/End: Original strand, 44837217 - 44837680
Alignment:
| Q |
20 |
ctccaaacatcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttcttatccctgcagatagtattccttctgttatcattc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
44837217 |
ctccaaacatcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttcttaaccctacagatagtattccttctgttatcattc |
44837316 |
T |
|
| Q |
120 |
tacactcatcctcctcgctcatacatgtttcagccatatcgaaaaaagccgagtagaagaacaacgcttcaacgaatcggttcacaaaagactgcgaatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44837317 |
tacactcatcctcctcgctcatacatgtttcagccatatcgaaaaaagccgagtagaagaacaacgcttcaacgaatcggttcacaaaagactgcgaatt |
44837416 |
T |
|
| Q |
220 |
aagacttgcttcagtttcaagtactatcattatacatggtttgatatctctcaaaaccctcatcaaattttccatacaatcttgctttgatattaaagtc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44837417 |
aagacttgcttcagtttcaagtactatcattatacatggtttgatatctctcaaaaccctcatcaaattttccatacaatcttgctttgatattaaagtc |
44837516 |
T |
|
| Q |
320 |
cttagaaaatatggagaataaacagcaacagcttcatccttttcaatttcaaaatcatcctctttgatttccaacatatcttctactaaaacaggtttat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44837517 |
cttagaaaatatggagaataaacagcaacagcttcatccttttcaatttcaaaatcatcctctttgatttccaacatatcttctactaaaacaggtttat |
44837616 |
T |
|
| Q |
420 |
ataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttcaatttt |
483 |
Q |
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| T |
44837617 |
ataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttcaatttt |
44837680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 38927092 - 38927153
Alignment:
| Q |
416 |
ttatataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttc |
477 |
Q |
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|||||||||||||| | |||||| |||||||||||||| |||| |||||||| ||||||| |
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| T |
38927092 |
ttatataaaaagggtatgttcaaggattcagcaaaactcattaaacttttgccaatttcttc |
38927153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 38926696 - 38926804
Alignment:
| Q |
20 |
ctccaaacatcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttcttatccctgcagatagtattccttctgttatcattc |
119 |
Q |
| |
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|||||||||||||| |||||||| ||||| |||||||| | |||| | ||||||| |||||||||||| |||||| |||| |||| | || | || |
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| T |
38926696 |
ctccaaacatcaatcttcacattcctaaccttcctttcttcatcttccaaaccaacaatgtttcttatcccttcagataatattgcttccatcattactc |
38926795 |
T |
|
| Q |
120 |
tacactcat |
128 |
Q |
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||||||||| |
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|
| T |
38926796 |
tacactcat |
38926804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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