View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_42 (Length: 231)
Name: NF15908_low_42
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44837934 - 44837708
Alignment:
| Q |
1 |
agttaattgagaagatgggttcnnnnnnngcacttatgtgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttga |
100 |
Q |
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| T |
44837934 |
agttaattgagaagatgggttcaaaaaaagcacttatgtgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttga |
44837835 |
T |
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| Q |
101 |
acatcttaagtttgagactaaaattcatctaatagattttgatataaaaagtggggtccagtgcatagctttgatgcaagcactttctgagagacaagat |
200 |
Q |
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| T |
44837834 |
acatgttaagtttgagactaaaattcatctaatagattttgatataaaaagtggggtccagtgcatagctttgatgcaagcactttctgagagacaggat |
44837735 |
T |
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| Q |
201 |
tgcatagttgaaatttttaagctaagt |
227 |
Q |
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| T |
44837734 |
tgcatagttgaaatttttaagctaagt |
44837708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 38927372 - 38927307
Alignment:
| Q |
39 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacat |
104 |
Q |
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|||||||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||| |||||| |
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| T |
38927372 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacat |
38927307 |
T |
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