View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_44 (Length: 227)

Name: NF15908_low_44
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_44
NF15908_low_44
[»] chr8 (13 HSPs)
chr8 (7-227)||(18671915-18672135)
chr8 (7-162)||(13111109-13111264)
chr8 (8-226)||(27123396-27123613)
chr8 (10-226)||(22713410-22713626)
chr8 (7-227)||(16600693-16600913)
chr8 (159-227)||(13110333-13110401)
chr8 (7-144)||(9286180-9286317)
chr8 (51-204)||(25095202-25095358)
chr8 (95-211)||(24577243-24577360)
chr8 (75-227)||(10661818-10661972)
chr8 (51-204)||(25059857-25060013)
chr8 (181-227)||(28371225-28371271)
chr8 (163-200)||(23355601-23355638)
[»] chr6 (8 HSPs)
chr6 (7-217)||(18713863-18714065)
chr6 (70-227)||(14762791-14762950)
chr6 (54-227)||(17524980-17525153)
chr6 (6-143)||(17947662-17947799)
chr6 (161-227)||(241950-242017)
chr6 (170-226)||(16142668-16142724)
chr6 (170-226)||(16142972-16143028)
chr6 (107-204)||(16177427-16177523)
[»] chr7 (7 HSPs)
chr7 (35-204)||(18084447-18084616)
chr7 (10-143)||(4240175-4240307)
chr7 (95-227)||(10649119-10649251)
chr7 (72-227)||(2547099-2547256)
chr7 (112-225)||(4173355-4173468)
chr7 (76-204)||(17600745-17600874)
chr7 (161-227)||(25621020-25621087)
[»] chr3 (10 HSPs)
chr3 (30-227)||(8736991-8737188)
chr3 (30-194)||(9089232-9089396)
chr3 (7-194)||(26013776-26013962)
chr3 (66-227)||(23378624-23378785)
chr3 (66-227)||(13428582-13428744)
chr3 (75-227)||(4765569-4765721)
chr3 (55-227)||(26011023-26011193)
chr3 (11-141)||(27304248-27304377)
chr3 (107-204)||(16242849-16242946)
chr3 (72-227)||(4832392-4832548)
[»] chr1 (8 HSPs)
chr1 (66-227)||(13201935-13202096)
chr1 (7-204)||(17615421-17615618)
chr1 (66-227)||(33103156-33103318)
chr1 (57-227)||(36571517-36571687)
chr1 (66-204)||(20866380-20866518)
chr1 (57-227)||(11013691-11013861)
chr1 (40-227)||(22619870-22620056)
chr1 (66-179)||(22607709-22607822)
[»] chr5 (10 HSPs)
chr5 (74-223)||(19926562-19926711)
chr5 (74-223)||(19923835-19923984)
chr5 (7-227)||(24878496-24878716)
chr5 (95-202)||(23355785-23355892)
chr5 (98-227)||(17167159-17167293)
chr5 (170-227)||(16375188-16375245)
chr5 (75-225)||(20713330-20713481)
chr5 (86-225)||(23209999-23210138)
chr5 (118-192)||(22011238-22011314)
chr5 (172-224)||(24663677-24663729)
[»] scaffold0002 (1 HSPs)
scaffold0002 (54-227)||(373984-374156)
[»] chr2 (10 HSPs)
chr2 (76-227)||(24544010-24544161)
chr2 (86-227)||(29891142-29891283)
chr2 (33-227)||(17402914-17403107)
chr2 (56-227)||(25520258-25520429)
chr2 (39-227)||(31403877-31404064)
chr2 (180-227)||(19879001-19879048)
chr2 (165-227)||(26651031-26651093)
chr2 (172-227)||(32890517-32890572)
chr2 (162-226)||(21498033-21498098)
chr2 (175-227)||(15437968-15438020)
[»] scaffold0142 (1 HSPs)
scaffold0142 (7-227)||(20681-20900)
[»] scaffold1102 (1 HSPs)
scaffold1102 (30-204)||(708-880)
[»] scaffold0337 (2 HSPs)
scaffold0337 (81-194)||(4715-4828)
scaffold0337 (86-194)||(17390-17498)
[»] chr4 (5 HSPs)
chr4 (89-227)||(4697594-4697732)
chr4 (66-227)||(8140889-8141048)
chr4 (75-227)||(9409029-9409185)
chr4 (51-225)||(16675229-16675399)
chr4 (173-225)||(16928540-16928592)
[»] scaffold0264 (1 HSPs)
scaffold0264 (75-227)||(20982-21135)
[»] scaffold0161 (1 HSPs)
scaffold0161 (107-213)||(5041-5147)
[»] scaffold0024 (1 HSPs)
scaffold0024 (170-227)||(38822-38879)
[»] scaffold0167 (1 HSPs)
scaffold0167 (162-227)||(10202-10268)
[»] scaffold0040 (1 HSPs)
scaffold0040 (170-226)||(26836-26892)
[»] scaffold0320 (1 HSPs)
scaffold0320 (181-227)||(6516-6562)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 18671915 - 18672135
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    |||||||||||||| || |||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  18671915 gacaagacgtgagttagtaatacaagaccgtcgaagccaagcagttactgttgaggcatgaagattttgaatttcaaaaagaagcggatttctcaatgaa 18672014  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgg 206  Q
    || |||||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||      
T  18672015 aatgtgggagacaagcggttgtccaaatggaggaagtgctgattggggaatgaggctttttccagttattttgctatgtaaaaatagtagtttttcataa 18672114  T
Q  207 gaaaaataggtcgcaaatcac 227  Q
    | ||||||| |||||||||||    
T  18672115 ggaaaatagttcgcaaatcac 18672135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 13111264 - 13111109
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  13111264 gacaagacgtgagtcaggaatacaagaccgtcgaagccaagcagttactgttgaggcatgaagattttgaatttcaaagagaagcggattcctcaatgaa 13111165  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggc 162  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  13111164 aacgtgggagacaagcggttgtccaaatggaagaagtgctgattggggaattaggc 13111109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 27123396 - 27123613
Alignment:
Q  8 acaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaa 107  Q
    |||||||||||| || ||||  |||  ||| |||||||||  ||||||||||||||  ||| ||||||||||||||| ||||| |  |||||||||| ||    
T  27123396 acaagacgtgagacatgaatgcaagttcgtcgaagccaagtagttactgttgaggcgggaaaattttgaatttcaaagagaagcgttttcctcaatggaa 27123495  T
Q  108 acgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatggg 207  Q
    |||||||||||||||||||  ||||||||||| ||| ||||||| ||| | || ||||||| ||||||||||||||||| ||||||||||||||||| ||    
T  27123496 acgtgggagacaagcggttc-ccaaatggaaggagtgctgatcgtggagttagactttttccagttattttgctatgtataaatagtagttttccatagg 27123594  T
Q  208 aaaaataggtcgcaaatca 226  Q
    ||||||  |||||||||||    
T  27123595 aaaaatgagtcgcaaatca 27123613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 22713410 - 22713626
Alignment:
Q  10 aagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaac 109  Q
    ||||||||||||||||||  |||||||| |||| |||||  |||  ||| ||||  |||||||| |||||||||| ||||  || ||||| |||| ||||    
T  22713410 aagacgtgagtcaggaatgcaagaccgtcgaagtcaagcaattatggttaaggcgggaagatttcgaatttcaaagagaaacggtttccttaatggaaac 22713509  T
Q  110 gtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaa 209  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||   |||| ||||| ||||||||||||||||| |||||||| |||||||| || |    
T  22713510 gtgggagacaagcggttgtccaaatggaagaagtgttgatcgtggagataggccttttccagttattttgctatgtataaatagtacttttccataggga 22713609  T
Q  210 aaataggtcgcaaatca 226  Q
    |||  ||||||| ||||    
T  22713610 aaacgggtcgcatatca 22713626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 16600913 - 16600693
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    |||||||||||||||| ||||  ||||| || ||||||||||  |||||  ||||||  ||||||||  ||||||||| ||||| || |||||||||| |    
T  16600913 gacaagacgtgagtcaagaatgcaagacagtcgaagccaagcgattactactgaggcgggaagatttcaaatttcaaagagaagcggtttcctcaatgga 16600814  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgg 206  Q
    || | |||| ||| ||||||||| |||||||||||||  |||||  ||  | |||||||||| | | |||||| |||||| ||||||||||||||||| |    
T  16600813 aatgcgggaaacaggcggttgtctaaatggaagaagtgttgatcatggtgttaggctttttccaataattttgttatgtataaatagtagttttccatag 16600714  T
Q  207 gaaaaataggtcgcaaatcac 227  Q
    ||||||  ||| |||||||||    
T  16600713 gaaaaacgggttgcaaatcac 16600693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 13110401 - 13110333
Alignment:
Q  159 aggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13110401 aggctttttccagttattttgctatgtaaaaatagtagttttccatagggaaaataggtcgcaaatcac 13110333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 9286180 - 9286317
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatg-a 105  Q
    ||||||||||||||||||| |  |||||||| ||||| || |  || ||||||||||   ||||||| |||||||||| |||| | | |||||||||| |    
T  9286180 gacaagacgtgagtcagga-tgcaagaccgtcgaagcaaaacaattcctgttgaggcggaaagatttcgaatttcaaagagaaatagtttcctcaatgga 9286278  T
Q  106 aaacgtgggagacaagcggttgtccaaatggaagaagta 144  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  9286279 aaatgtgggagacaagcggttgtccaaatggaagaagta 9286317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 25095358 - 25095202
Alignment:
Q  51 ttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatc 150  Q
    |||||||||||||  ||||| ||| ||||||||| ||||| || |||||  ||| ||| ||||||||||||||||| |||||||||||  |||  |||||    
T  25095358 ttactgttgaggctggaagaatttaaatttcaaagagaagcggtttccttgatggaaatgtgggagacaagcggtt-tccaaatggaatgagtgttgatc 25095260  T
Q  151 gggg----aatcaggctttttctagttattttgctatgtaaaaatagtagttttccat 204  Q
      ||    ||| |||||||||| |||||||||||| |||| |||||||||||||||||    
T  25095259 atggagttaattaggctttttccagttattttgctgtgtataaatagtagttttccat 25095202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 24577243 - 24577360
Alignment:
Q  95 ttcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatag 193  Q
    |||||||||| | ||||||||||||||||||||||  | ||||||  ||| ||||||  || || | |||||||| |||||||||  |||||| ||||||    
T  24577243 ttcctcaatggagaacgtgggagacaagcggttgtttacatggaatgagtgctgatcttgggattatgctttttccagttattttaatatgtataaatag 24577342  T
Q  194 tagttttccatgggaaaa 211  Q
    ||||||| ||| ||||||    
T  24577343 tagtttttcataggaaaa 24577360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 10661972 - 10661818
Alignment:
Q  75 gaatttcaaaa-agaagtggattcctcaatgaa-aacgtgggagacaagcggttgtcca-aatggaagaagtactgatcggggaatcaggctttttctag 171  Q
    ||||||||||| ||||  || |||||||||| | ||||||||||||||| ||||||||| |||||||| |||  |||||| || || ||  | |||| ||    
T  10661972 gaatttcaaaagagaatcggtttcctcaatggagaacgtgggagacaagtggttgtccataatggaaggagtgttgatcgtgggattagtttctttccag 10661873  T
Q  172 ttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    || |||| ||||||| |||||  |||||||||| || |||| ||||||||||||||    
T  10661872 ttgtttt-ctatgtataaataagagttttccattgggaaaacaggtcgcaaatcac 10661818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 25060013 - 25059857
Alignment:
Q  51 ttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatc 150  Q
    |||||||||||||   |||| ||||||||||||| ||||| || |||||  ||| |||||||| ||||||||| || |||||||||||  |||  |||||    
T  25060013 ttactgttgaggctgaaagaatttgaatttcaaagagaagcggtttccttgatggaaacgtggaagacaagcgatt-tccaaatggaatgagtgttgatc 25059915  T
Q  151 gggg----aatcaggctttttctagttattttgctatgtaaaaatagtagttttccat 204  Q
      ||    ||| |||||||||| ||||||||| ||   || |||||||||||||||||    
T  25059914 atggagttaattaggctttttccagttattttactgcatataaatagtagttttccat 25059857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 28371271 - 28371225
Alignment:
Q  181 tatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||||| ||||||||||||||||| || ||||| |||||||||||||    
T  28371271 tatgtataaatagtagttttccatagggaaaatgggtcgcaaatcac 28371225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 23355638 - 23355601
Alignment:
Q  163 tttttctagttattttgctatgtaaaaatagtagtttt 200  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  23355638 tttttctagttattttactatgtataaatagtagtttt 23355601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 18714065 - 18713863
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    |||||||||||||||||||||  |||||||| ||||||||||  |||| ||||||||  ||||||||| ||||||||| ||||| || ||||| ||||      
T  18714065 gacaagacgtgagtcaggaatgcaagaccgtcgaagccaagcaattacagttgaggcgggaagattttcaatttcaaagagaagcggtttccttaatg-- 18713968  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgg 206  Q
          |||||||||||||||||||||||||||||||  |||||  ||| | |||||||||||||||||||||||||||| || |||||||||||||| |    
T  18713967 ------ggagacaagcggttgtccaaatggaagaagtgttgatcatggagttaggctttttctagttattttgctatgtataagtagtagttttccatag 18713874  T
Q  207 gaaaaataggt 217  Q
    | |||||||||    
T  18713873 ggaaaataggt 18713863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 14762791 - 14762950
Alignment:
Q  70 attttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttct 169  Q
    |||| |||||||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||| |||||  ||| || ||| | ||||||||| |    
T  14762791 atttggaatttcaaagagaagcggtttcctcaagggaaacgtgggagacaagcggttgtccaaatggaggaagtgttgaccgtggagttaggcttttttt 14762890  T
Q  170 -ag-ttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
     || |||||||||||||| |||||||||||||||| | || |||||||||||||||||||    
T  14762891 cagtttattttgctatgttaaaatagtagttttccgtagggaaaataggtcgcaaatcac 14762950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 17525153 - 17524980
Alignment:
Q  54 ctgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcgg 152  Q
    ||||||||||  |||||||  |||||||||| ||||| || || ||| ||||| ||||||||||||||||||||||| | |||||||||||  ||||| |    
T  17525153 ctgttgaggcgggaagattc-gaatttcaaagagaagcggtttactctatgaagaacgtgggagacaagcggttgtctacatggaagaagtgttgatcag 17525055  T
Q  153 ggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    || || |  ||||||  ||||||||| ||||||| ||||||||||||||  | || |||| ||||||||||||||    
T  17525054 gggattatacttttttcagttatttttctatgtataaatagtagttttctgtagggaaaacaggtcgcaaatcac 17524980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 17947662 - 17947799
Alignment:
Q  6 agacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatga 105  Q
    ||||||||||||||||||||||   | ||||| ||||||||||  ||| |||||||||   |||||| | |||||||||||||||  | ||||||||||     
T  17947662 agacaagacgtgagtcaggaatgcgataccgtcgaagccaagcaattattgttgaggcggaaagattataaatttcaaaaagaagcagtttcctcaatgg 17947761  T
Q  106 aaacgtgggagacaagcggttgtccaaatggaagaagt 143  Q
    |||| ||||||||||||||| ||| | || ||||||||    
T  17947762 aaacatgggagacaagcggtagtctacatagaagaagt 17947799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 241950 - 242017
Alignment:
Q  161 gctttttctagttatttt-gctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||||||||||||||||| ||||| || ||||||||||||| |||  |||||||||||||||||||||    
T  241950 gctttttctagttatttttgctatctataaatagtagtttttcatatgaaaaataggtcgcaaatcac 242017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 16142724 - 16142668
Alignment:
Q  170 agttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatca 226  Q
    ||||||||| ||||||| |||||||||||||||||  | ||||| ||||||||||||    
T  16142724 agttattttactatgtataaatagtagttttccatatggaaaatgggtcgcaaatca 16142668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 16143028 - 16142972
Alignment:
Q  170 agttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatca 226  Q
    ||||||||| ||||||| |||||||||||||||||  | ||||| ||||||||||||    
T  16143028 agttattttactatgtataaatagtagttttccatatggaaaatgggtcgcaaatca 16142972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 16177523 - 16177427
Alignment:
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccat 204  Q
    ||||||||||||||||||||||| | ||||||| ||| ||||| | || || ||  | |||| | ||||||| ||||||| ||||| |||||||||||    
T  16177523 aacgtgggagacaagcggttgtctacatggaaggagtgctgattgtgggattagtttctttccacttatttt-ctatgtataaatattagttttccat 16177427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 18084616 - 18084447
Alignment:
Q  35 cgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaat 134  Q
    ||||||||||||||  |||||||| ||||  ||||||||||||||||||| |||||||| |||||||||| |||| | ||| ||||||||||||||| ||    
T  18084616 cgttgaagccaagcaattactgtttaggcgggaagattttgaatttcaaagagaagtggtttcctcaatggaaacattggaaacaagcggttgtccacat 18084517  T
Q  135 ggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccat 204  Q
    |||||||||  |||||  ||| | |||||||||| | ||||||||||||||| |||||||||||||||||    
T  18084516 ggaagaagtgttgatcatggagttaggctttttcgacttattttgctatgtataaatagtagttttccat 18084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 4240307 - 4240175
Alignment:
Q  10 aagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaac 109  Q
    ||||||||||| |||||| ||||||||| ||||| |||   ||||||| ||||   ||||||||||||||| ||| ||||| || |||||||||||||||    
T  4240307 aagacgtgagtaaggaatgtaagaccgtcgaagctaagtaattactgtggaggtgggaagattttgaattttaaagagaagcggtttcctcaatgaaaac 4240208  T
Q  110 gtgggagacaagcggttgtccaaatggaagaagt 143  Q
     |||||||||||||||| ||||||| ||||||||    
T  4240207 atgggagacaagcggtt-tccaaatagaagaagt 4240175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 10649119 - 10649251
Alignment:
Q  95 ttcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagt 194  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||  |||| | ||| | | |||||||| | ||||||| ||||||| |||||||    
T  10649119 ttcctcaatggaaacgtgagagactagcggttgtccaaatggaagaagtgatgattgtggacttatgctttttccaattatttttctatgtataaatagt 10649218  T
Q  195 agttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||| ||||| || |||||  ||||||||||||    
T  10649219 agttgtccatagggaaaatgagtcgcaaatcac 10649251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 2547256 - 2547099
Alignment:
Q  72 tttgaatttcaaaa-agaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttct 169  Q
    |||||||||||||| | |||||| || ||||||| | ||||||||||||||||||||||| | ||||||| |||  |||||| || || ||  | |||||    
T  2547256 tttgaatttcaaaagacaagtggttttctcaatggagaacgtgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttct 2547157  T
Q  170 agttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||||| ||||||| || || ||||||||||| || ||||  |||||||||||||    
T  2547156 agttatttttctatgtataagtaatagttttccatagggaaaacgggtcgcaaatcac 2547099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 4173355 - 4173468
Alignment:
Q  112 gggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaa 211  Q
    |||||||||||||||||  | |||||||||||  |||||| | | | |||||||||| || |||||||||||||| ||||| ||| ||||||| || |||    
T  4173355 gggagacaagcggttgtgtacatggaagaagtgttgatcgtgaagttaggctttttccagctattttgctatgtataaatattagatttccatagggaaa 4173454  T
Q  212 ataggtcgcaaatc 225  Q
    |  |||||||||||    
T  4173455 acgggtcgcaaatc 4173468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 17600874 - 17600745
Alignment:
Q  76 aatttcaaaaagaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagtta 174  Q
    ||||| ||| |||||||| |||||||||| | ||||||| |||||| |||| ||| | ||||||| ||| ||||||  || ||   |||||||| |||||    
T  17600874 aattttaaagagaagtggtttcctcaatggagaacgtggaagacaaccggtagtctacatggaaggagttctgatcttgggattgtgctttttccagtta 17600775  T
Q  175 ttttgctatgtaaaaatagtagttttccat 204  Q
    ||||  |||||| |||||||||||||||||    
T  17600774 ttttcttatgtataaatagtagttttccat 17600745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 25621020 - 25621087
Alignment:
Q  161 gctttttctagttattttg-ctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||||||||||||||  ||||||  ||||||||||||| |||  |||||||||||||||||||||    
T  25621020 gctttttctagttatttttactatgtgtaaatagtagtttttcatatgaaaaataggtcgcaaatcac 25621087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 8736991 - 8737188
Alignment:
Q  30 aagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtc 129  Q
    |||||||| ||||| ||||  |||||||||||||  ||||||||||||||||||| ||||  || ||||| | || |||||||||||||||||  |||||    
T  8736991 aagaccgtcgaagctaagcaattactgttgaggcgggaagattttgaatttcaaagagaaacggtttccttattggaaacgtgggagacaagcatttgtc 8737090  T
Q  130 caaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||||||||||  || ||| ||| | |||||||||| ||||||||||||||||| ||||||||||||||||  |||||||  ||| |||||||||    
T  8737091 caaatggaagaagtggtgttcgtggagttaggctttttcaagttattttgctatgtataaatagtagttttccacaggaaaaacgggttgcaaatcac 8737188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 9089232 - 9089396
Alignment:
Q  30 aagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtc 129  Q
    |||||||| ||||| ||||  |||||||||||||  ||||||||||||||||||| ||||  || ||||| | || |||||||||||||||||  |||||    
T  9089232 aagaccgtcgaagctaagcaattactgttgaggcgggaagattttgaatttcaaagagaaacggtttccttattggaaacgtgggagacaagcatttgtc 9089331  T
Q  130 caaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagt 194  Q
    ||||||||||||||  |||||| ||| | ||||| |||||||||| ||||||||||| |||||||    
T  9089332 caaatggaagaagtgttgatcgtggagttaggctatttctagttagtttgctatgtataaatagt 9089396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 26013962 - 26013776
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    ||||||||| ||||| |||||  ||||| || ||||||||||  ||  |||||||||   |||||||  ||||||||| ||||| || ||||||||||||    
T  26013962 gacaagacgcgagtc-ggaatgcaagactgtcgaagccaagcaattcttgttgaggcggaaagatttcaaatttcaaagagaagcggtttcctcaatgaa 26013864  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagt 194  Q
    ||| |||||||||||| |||||| | |||||||||||  |||||| ||| | ||||| |||||||||| ||||||||||| |||||||    
T  26013863 aacatgggagacaagcagttgtcaacatggaagaagtgttgatcgtggagttaggctatttctagttagtttgctatgtataaatagt 26013776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 23378785 - 23378624
Alignment:
Q  66 gaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggcttt 165  Q
    |||||||| |||||| ||| |||||||| ||||||||||||||| |||||||||| |||||||| | |||||||||||  || ||| || || | || ||    
T  23378785 gaagatttcgaatttaaaagagaagtggtttcctcaatgaaaacatgggagacaaacggttgtctacatggaagaagtgttggtcgtgggattatgcctt 23378686  T
Q  166 ttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||| | ||||||||||||||| ||||||||||||| ||| || |||||  ||| ||||||||    
T  23378685 ttccaattattttgctatgtataaatagtagttttacatagggaaaatgtgtcacaaatcac 23378624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 13428582 - 13428744
Alignment:
Q  66 gaagattttgaatttcaaaaagaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctt 164  Q
    |||||||| |||||||||| ||||  |  |||||||||| | ||||||||||||||| ||||||| | ||||||||||||||||||  || || | ||||    
T  13428582 gaagatttcgaatttcaaagagaaacgatttcctcaatggagaacgtgggagacaagtggttgtctacatggaagaagtactgatcatgggattatgctt 13428681  T
Q  165 tttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||| | ||||||| ||||||| ||||||||||||||||| ||  ||| | ||||||||||||    
T  13428682 tttccatttattttactatgtataaatagtagttttccataggggaaacatgtcgcaaatcac 13428744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 4765569 - 4765721
Alignment:
Q  75 gaatttcaaaaagaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagtt 173  Q
    |||||||||| |||||||  |||||||||| | ||| |||||||||||| |||||| | |||||||||||   ||||| || ||    ||| ||||||||    
T  4765569 gaatttcaaagagaagtgatttcctcaatggagaacatgggagacaagcagttgtctacatggaagaagtgtagatcgtgggattgtacttgttctagtt 4765668  T
Q  174 attttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  4765669 atttt-ctatgtataaatagtagttttccataggaaaaatgggtcgcaaatcac 4765721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 26011193 - 26011023
Alignment:
Q  55 tgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcgggg 154  Q
    |||||||||  |||||||   ||||||||| ||||| || ||||||||||||||||||||||||||| |||| || | || || |||||  ||||  |||    
T  26011193 tgttgaggcgggaagattccaaatttcaaagagaagcggtttcctcaatgaaaacgtgggagacaagtggtt-tctacatagaggaagtgttgatttggg 26011095  T
Q  155 aatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    | | |  ||||||| ||||||||| ||||||| ||||||||||||||||| || |||| ||||||||||||||    
T  26011094 att-atcctttttccagttattttcctatgtataaatagtagttttccatagggaaaacaggtcgcaaatcac 26011023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 27304248 - 27304377
Alignment:
Q  11 agacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacg 110  Q
    ||||||||||||||| |  | |||||| ||||||||||  || ||||||||||  ||||||||  ||||||||| ||||| || ||||| ||||  || |    
T  27304248 agacgtgagtcagga-tgcaggaccgtcgaagccaagcaattcctgttgaggcgggaagatttcaaatttcaaagagaagcggtttcctaaatgggaaag 27304346  T
Q  111 tgggagacaagcggttgtccaaatggaagaa 141  Q
    ||||||||||||||||||| |||||||||||    
T  27304347 tgggagacaagcggttgtctaaatggaagaa 27304377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 16242849 - 16242946
Alignment:
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccat 204  Q
    |||||| |||||||||||||||  | |||||||||||  |||||| ||| | |||||||||| ||||||||||||| | | |||||||||||||||||    
T  16242849 aacgtgagagacaagcggttgtttacatggaagaagtgttgatcgtggagttaggctttttccagttattttgctacgaataaatagtagttttccat 16242946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 4832392 - 4832548
Alignment:
Q  72 tttgaatttcaaaaagaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttcta 170  Q
    ||||||||||||| ||||| || |||||||| | | ||||||||| | || | ||||||  ||||||||||||  |||| | || || | |||||| |      
T  4832392 tttgaatttcaaagagaagcggtttcctcaaaggagaacgtgggataaaaacagttgtctcaatggaagaagtgatgattgtgggattatgcttttgccg 4832491  T
Q  171 gttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||||||| ||||||| ||||||||||||||||| || ||||| | |||||||||||    
T  4832492 gttattttcctatgtataaatagtagttttccatagggaaaatggatcgcaaatcac 4832548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 13201935 - 13202096
Alignment:
Q  66 gaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggcttt 165  Q
    ||||||||||||||| ||| ||| | || || ||||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||| | |||||||    
T  13201935 gaagattttgaattttaaagagaggcggttttctcaatagaaacgtgggagacaagcggttgtctaaatggaagaagtgctgatcgtggagttaggcttt 13202034  T
Q  166 ttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||| ||||||||||||||||| ||||||||||||| ||| ||||||| | ||||||||||||    
T  13202035 ttccagttattttgctatgtataaatagtagtttttcataggaaaaacatgtcgcaaatcac 13202096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 17615618 - 17615421
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    ||||||||||||||| |||||  |||||||| ||||||||||  || |||||||||   |||||||| |||||||||| ||||  || ||||||||||||    
T  17615618 gacaagacgtgagtcgggaatgcaagaccgtcgaagccaagcaattcctgttgaggtgggaagatttcgaatttcaaagagaatcgggttcctcaatgaa 17615519  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccat 204  Q
    |||||||||||||||||||| || | ||| |||||||  |||| | ||| | |||||||||| ||||||||||||||| | |||||||||||||||||    
T  17615518 aacgtgggagacaagcggttttctacatgtaagaagtgttgattgtggagttaggctttttccagttattttgctatgcataaatagtagttttccat 17615421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 33103318 - 33103156
Alignment:
Q  66 gaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggcttt 165  Q
    |||||||| |||||||||| ||||  || |||||||||  |||||||||||||||| ||||||| | |||||||||||  |||| | || || | |||||    
T  33103318 gaagatttcgaatttcaaagagaatcggtttcctcaatagaaacgtgggagacaagtggttgtctacatggaagaagtgttgattgtgggattatgcttt 33103219  T
Q  166 ttctagttattttgctatgtaaaaatagtagttttccat-gggaaaaataggtcgcaaatcac 227  Q
    ||| |||||||||| |||||| ||||||||||||||||| ||| |||| ||||||||||||||    
T  33103218 ttccagttattttggtatgtataaatagtagttttccataggggaaaacaggtcgcaaatcac 33103156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 36571517 - 36571687
Alignment:
Q  57 ttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtg--ggagacaagcggttgtccaaatggaagaagtactgatcgggg 154  Q
    |||||||  ||| |||| ||||||| || |||||  | |||||||| |||||||||  ||||||||| |||||||||||||||||||||  ||| || ||    
T  36571517 ttgaggcgggaaaatttcgaatttcgaagagaagcagtttcctcaaggaaaacgtgtgggagacaagtggttgtccaaatggaagaagtgttgaccgtgg 36571616  T
Q  155 aatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    | | |||||||||  |||||||||||||| |  ||||||||||||||||| |||||||| |||||||||||||    
T  36571617 agttaggcttttttcagttattttgctatct--aaatagtagttttccataggaaaaatgggtcgcaaatcac 36571687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 20866518 - 20866380
Alignment:
Q  66 gaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggcttt 165  Q
    |||||||| |||||||||| |||||  | |||||||||| ||| |||||||||||||||||||  | |||||||||||  |||||   |||| |||||||    
T  20866518 gaagatttcgaatttcaaagagaagcagtttcctcaatggaaatgtgggagacaagcggttgtttacatggaagaagtgttgatcttagaattaggcttt 20866419  T
Q  166 ttctagttattttgctatgtaaaaatagtagttttccat 204  Q
    ||  ||||||||| ||||||| |||||||||||||||||    
T  20866418 tttcagttattttactatgtataaatagtagttttccat 20866380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 11013691 - 11013861
Alignment:
Q  57 ttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcgggga 155  Q
    |||||||| |||||||  |||||||||| ||||  || |||||||||| | ||||||||||||||| ||||||| | ||||||||||| ||||||| ||     
T  11013691 ttgaggcaagaagattc-gaatttcaaagagaaacggtttcctcaatggagaacgtgggagacaagtggttgtctacatggaagaagtgctgatcgtggg 11013789  T
Q  156 atcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||    ||||||| ||||||||| ||||||| | |||| |||||||||| || ||||| ||| |||||||||    
T  11013790 attgtactttttccagttatttttctatgtatatataggagttttccataggtaaaatgggttgcaaatcac 11013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 22619870 - 22620056
Alignment:
Q  40 aagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaag 139  Q
    |||||||||  || || |||||||| |||||||| | || ||||| ||||| || |||||||||| |||||||||||| ||||||||||  | |||||||    
T  22619870 aagccaagcaattcctattgaggcaggaagatttcgtatctcaaagagaagcggtttcctcaatggaaacgtgggagaaaagcggttgtttacatggaag 22619969  T
Q  140 aagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
     | | ||||||| || || | |||| ||| ||| ||||||||||||| |||||||| |||||||| || |||| | |||| |||||||    
T  22619970 gatttctgatcgtgggattatgcttgttc-agtaattttgctatgtataaatagtaattttccatagggaaaacaagtcgtaaatcac 22620056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 22607709 - 22607822
Alignment:
Q  66 gaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggcttt 165  Q
    |||||||| |||||||||| ||||| || ||||||| |  |||||||| | ||||||||||||| | |||||||||||  |||||| |  || | |||||    
T  22607709 gaagatttcgaatttcaaagagaagcggtttcctcagttgaaacgtggaaaacaagcggttgtctacatggaagaagtgttgatcgtgagattatgcttt 22607808  T
Q  166 ttctagttattttg 179  Q
    ||| ||||||||||    
T  22607809 ttccagttattttg 22607822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 19926562 - 19926711
Alignment:
Q  74 tgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagtt 173  Q
    ||||||||||| ||||| || ||||| |||| |||||||||| |||||||||||||||||||||| |||| || |||| ||| | |||||||||||||||    
T  19926562 tgaatttcaaagagaagcggtttcctaaatggaaacgtgggacacaagcggttgtccaaatggaataagtgctaatcgtggagttaggctttttctagtt 19926661  T
Q  174 attttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaa 223  Q
    ||||||||||||| || |||||||||||||| || ||||| |||||||||    
T  19926662 attttgctatgtataactagtagttttccatagggaaaatgggtcgcaaa 19926711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 19923835 - 19923984
Alignment:
Q  74 tgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagtt 173  Q
    ||||||||||| ||||| || ||||| |||| |||||||||| |||||||||||||||||||||| |||| || |||| ||| | | |||||||||||||    
T  19923835 tgaatttcaaagagaagcggtttcctaaatggaaacgtgggacacaagcggttgtccaaatggaataagtgctaatcgtggagttatgctttttctagtt 19923934  T
Q  174 attttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaa 223  Q
    ||||||||||||| || |||||||||||||| || ||||| |||||||||    
T  19923935 attttgctatgtataactagtagttttccatagggaaaatgggtcgcaaa 19923984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 24878716 - 24878496
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    ||||||| | |||||| ||||  |||||||| |||||||| |  ||| |||||||||  |||||||| |||||||||| | ||| || |||||||||| |    
T  24878716 gacaagatgcgagtcaagaatgcaagaccgtcgaagccaaactattattgttgaggcgggaagatttcgaatttcaaagaaaagcggtttcctcaatgga 24878617  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggcttt-ttctagttattttgctatgtaaaaatagtagttttccatg 205  Q
    ||| |||||||||  | |||||| | |||||||||||  |||| | ||| |   ||||| |||| |||||||||||||||| |||||||||| ||||||     
T  24878616 aacatgggagacagccagttgtctacatggaagaagtgatgattgtggagttgagctttcttct-gttattttgctatgtataaatagtagtgttccatc 24878518  T
Q  206 ggaaaaataggtcgcaaatcac 227  Q
       |||||||||| ||||||||    
T  24878517 tataaaataggtctcaaatcac 24878496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 23355892 - 23355785
Alignment:
Q  95 ttcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagt 194  Q
    |||||||||| ||||||||||||||| |||||||| | |||||||||||  |||||| ||| | ||| |||||| ||| |||||  ||| || |||||||    
T  23355892 ttcctcaatgcaaacgtgggagacaaacggttgtctacatggaagaagtgatgatcgtggagttaggttttttccagtaattttattatttataaatagt 23355793  T
Q  195 agttttcc 202  Q
    ||||||||    
T  23355792 agttttcc 23355785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 17167159 - 17167293
Alignment:
Q  98 ctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttct-----agttattttgctatgtaaaaata 192  Q
    ||||||| |||||||||||||||| ||||||| | |||||||||||  |||| | ||| | ||  ||||| |     ||||||||||||||||| |||||    
T  17167159 ctcaatggaaacgtgggagacaagtggttgtctacatggaagaagtgttgattgtggagttagatttttttttttccagttattttgctatgtataaata 17167258  T
Q  193 gtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||||||||||| ||||  |||| ||||||||    
T  17167259 gtagttttccatggggaaaacgggtcccaaatcac 17167293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 16375245 - 16375188
Alignment:
Q  170 agttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||||||||||||| ||||||||||||||||   ||||||| |||||||||||||    
T  16375245 agttattttgctatgtataaatagtagttttccaaatgaaaaatgggtcgcaaatcac 16375188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 225
Target Start/End: Complemental strand, 20713481 - 20713330
Alignment:
Q  75 gaatttcaaaa-agaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagt 172  Q
    ||||||||||| ||||| || |||||||| | | ||||||||||||||||||||||| | ||||||| ||| ||||||| || || ||  | |||| | |    
T  20713481 gaatttcaaaagagaagcggtttcctcaagggagaacgtgggagacaagcggttgtctacatggaaggagtgctgatcgtgggattagtttctttcaact 20713382  T
Q  173 tattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatc 225  Q
    || ||| ||||||| ||||| ||||||||||| || ||||  |||||||||||    
T  20713381 ta-tttcctatgtataaataatagttttccatagggaaaacgggtcgcaaatc 20713330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 23209999 - 23210138
Alignment:
Q  86 agaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatg 184  Q
    |||||||| |||||||| ||| ||| ||||||||||||||||||| ||||||||| |||  |||||| || || ||  | |||| | ||| ||| |||||    
T  23209999 agaagtggtttcctcaaggaagaacatgggagacaagcggttgtctaaatggaaggagtgttgatcgtgggattagtttctttccactta-tttcctatg 23210097  T
Q  185 taaaaatagtagttttccatgggaaaaataggtcgcaaatc 225  Q
    || ||||| |||||| |||| || |||| ||||||||||||    
T  23210098 tataaataatagtttcccatagggaaaacaggtcgcaaatc 23210138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 22011314 - 22011238
Alignment:
Q  118 caagcggttgtccaa-atggaagaagtactgatcggggaatcaggctttttctagttattttgc-tatgtaaaaata 192  Q
    ||||||||||||||| ||||| ||||| ||||||  || || || ||||||||||||||||| | ||||||||||||    
T  22011314 caagcggttgtccaagatggaggaagtgctgatcatgggattagtctttttctagttattttccttatgtaaaaata 22011238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 24663729 - 24663677
Alignment:
Q  172 ttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaat 224  Q
    ||||||| |||||||  ||||||||||||||||  ||||||| ||||||||||    
T  24663729 ttattttactatgtactaatagtagttttccatatgaaaaatgggtcgcaaat 24663677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 373984 - 374156
Alignment:
Q  54 ctgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggg 153  Q
    ||||||||||  |||||||| |||||| ||| ||||| || |||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||| |    
T  373984 ctgttgaggcgggaagatttcgaattttaaagagaagcggtttcctcaatggaaacgtgggagacaagcggttgtctacatggaagaagtgctgatcgtg 374083  T
Q  154 gaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
      ||   |||||||  ||||||||||||||||| ||||||||||||||||| || ||||  |||||||||||||    
T  374084 agattttgcttttttcagttattttgctatgtataaatagtagttttccatagggaaaa-cggtcgcaaatcac 374156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 24544161 - 24544010
Alignment:
Q  76 aatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttat 175  Q
    ||||||||| ||||| || |||||||||| |||||||||||||||||||| ||  | ||||||||||| ||||||| ||| | ||| |||||| ||||||    
T  24544161 aatttcaaagagaagcggtttcctcaatggaaacgtgggagacaagcggtagtttacatggaagaagtgctgatcgtggagttaggttttttccagttat 24544062  T
Q  176 tttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||| ||||||| ||||||||||||||||| |||||||  |||| ||||||||    
T  24544061 tttactatgtataaatagtagttttccataggaaaaacgggtcacaaatcac 24544010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 29891142 - 29891283
Alignment:
Q  86 agaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgt 185  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |||||  ||| | ||| |||||  ||||||||||||||||    
T  29891142 agaagtggtttcctcaatggaaacgtgggagacaagcggttgtccaaatggaagaagtgttgatcttggagttaggattttttcagttattttgctatgt 29891241  T
Q  186 aaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    | ||||||||||| |||||  ||||||  ||||||| |||||    
T  29891242 ataaatagtagttgtccatatgaaaaacgggtcgcagatcac 29891283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 17403107 - 17402914
Alignment:
Q  33 accgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaat-gaaaacgtgggagacaagcggttgtcca 131  Q
    ||||| |||||||| |  || ||||||||||  ||||||||||||||||||| ||||| || ||||||||| || || |||||||||||  ||||||| |    
T  17403107 accgtcgaagccaatcaattcctgttgaggcgggaagattttgaatttcaaagagaagcggtttcctcaatggagaatgtgggagacaa--ggttgtcta 17403010  T
Q  132 aatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
      |||||| |||  |||||| || || | |||||||| |||||||||  |||||| ||||||||||| |||||  | |||| ||||||||||||||    
T  17403009 cgtggaaggagtgttgatcgtgggattatgctttttccagttattttcttatgtataaatagtagttctccataaggaaaacaggtcgcaaatcac 17402914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 25520258 - 25520429
Alignment:
Q  56 gttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcgggga 155  Q
    ||||||||  ||| |||||| ||||||||| |||| || |||||||||  |||| ||||| ||||| ||||||| | |||||||||||  |||| | |||    
T  25520258 gttgaggcgggaaaattttggatttcaaaaggaagcggtttcctcaatagaaacatgggatacaagaggttgtcgacatggaagaagtgttgattgtgga 25520357  T
Q  156 atcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
     | |||||||||| |||||| ||  |||||| ||||| ||||||||||| || ||||  ||| |||||||||    
T  25520358 gttaggctttttccagttatcttattatgtataaataatagttttccatagggaaaacgggttgcaaatcac 25520429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 31403877 - 31404064
Alignment:
Q  39 gaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaa 138  Q
    ||||||||||  |||||||||||||  ||||| ||||||||||||| ||||| || |||||  ||| ||||||||||||||||||| | ||   || |||    
T  31403877 gaagccaagcaattactgttgaggctagaagaatttgaatttcaaagagaagcggtttccttgatggaaacgtgggagacaagcgggt-tcttgattgaa 31403975  T
Q  139 gaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
     ||||  || ||  ||| | ||  |||||  ||||||||||||||||| |||||||||||||||||    ||||| |||||||||||||    
T  31403976 aaagtgttggtcatggagttagatttttttcagttattttgctatgtataaatagtagttttccatattgaaaatgggtcgcaaatcac 31404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 19879048 - 19879001
Alignment:
Q  180 ctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||    
T  19879048 ctatgtaaaaatagtagttttccataggaaaaacgggtcgcaaatcac 19879001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 26651093 - 26651031
Alignment:
Q  165 tttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||||||||||||| ||||||| |||||  |||||||||| || |||| ||||||||||||||    
T  26651093 tttctagttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaatcac 26651031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 32890572 - 32890517
Alignment:
Q  172 ttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||| ||||||| |||||||||||||||||    |||||||||||||||||||    
T  32890572 ttattttactatgtataaatagtagttttccatatcgaaaataggtcgcaaatcac 32890517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 21498033 - 21498098
Alignment:
Q  162 ctttttctagttattttg-ctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatca 226  Q
    |||||||||||| ||||  ||||||| ||||||||||||| |||  || |||||||||||||||||    
T  21498033 ctttttctagttgtttttactatgtataaatagtagtttttcatatgagaaataggtcgcaaatca 21498098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 15437968 - 15438020
Alignment:
Q  175 ttttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||| ||||||| |||| |||||||| |||  |||||||||||||||||||||    
T  15437968 ttttactatgtataaattgtagtttttcatatgaaaaataggtcgcaaatcac 15438020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 20900 - 20681
Alignment:
Q  7 gacaagacgtgagtcaggaatataagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaa 106  Q
    ||||||| ||||| || ||||  |||| ||| |||||||||   ||||||||||| |  ||||| || |||||  ||| |||||  | ||||||||||||    
T  20900 gacaagatgtgagacaagaattcaagatcgtcgaagccaagaaattactgttgagccgggaagaattcgaattgtaaagagaagcagtttcctcaatgaa 20801  T
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgg 206  Q
    ||||||||||| |||| ||||| ||||| |||||||| ||||||  ||| | |||||||||||||||||||| ||||||| ||||| ||||||||||| |    
T  20800 aacgtgggagagaagcagttgtgcaaattgaagaagtgctgatcttggagttaggctttttctagttatttt-ctatgtataaataatagttttccatag 20702  T
Q  207 gaaaaataggtcgcaaatcac 227  Q
    | || |  |||||||||||||    
T  20701 gcaagacgggtcgcaaatcac 20681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 708 - 880
Alignment:
Q  30 aagaccgttgaagccaagccgttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtc 129  Q
    |||| ||||||||||||||  ||| |||||||||  ||||| || ||| |||||| |||| | | |||||||||| ||| ||||||||||||   |||||    
T  708 aagatcgttgaagccaagcaattaatgttgaggcgggaagaattagaaattcaaagagaaatagtttcctcaatggaaatgtgggagacaagtaattgtc 807  T
Q  130 caaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccat 204  Q
    ||||||||||||||  |||||| ||| |  || |||||| ||||||||||||||||| |||||||||||||||||    
T  808 caaatggaagaagtgttgatcgtggagt-tggatttttc-agttattttgctatgtataaatagtagttttccat 880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 4828 - 4715
Alignment:
Q  81 caaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgc 180  Q
    |||| |||| ||| |||||||||| ||| |||||||| |||||||||||||||||||||||||  |||||| ||| | ||||| |||||||||| |||||    
T  4828 caaagagaaatggtttcctcaatggaaatgtgggagataagcggttgtccaaatggaagaagtgttgatcgtggagttaggctatttctagttagtttgc 4729  T
Q  181 tatgtaaaaatagt 194  Q
    |||||| |||||||    
T  4728 tatgtataaatagt 4715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 17498 - 17390
Alignment:
Q  86 agaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgt 185  Q
    |||| ||| |||||||||| ||| |||||||| |||||||||||||||||||||||||  |||||| ||| | ||||| |||||||||| ||||||||||    
T  17498 agaaatggtttcctcaatggaaatgtgggagataagcggttgtccaaatggaagaagtgttgatcgtggagttaggctatttctagttagtttgctatgt 17399  T
Q  186 aaaaatagt 194  Q
    | |||||||    
T  17398 ataaatagt 17390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 4697732 - 4697594
Alignment:
Q  89 agtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggc--tttttctagttattttgctatgta 186  Q
    ||||| |||||||||||||| |||||||||||||||||   ||| |||||||||| |||| || |||  |||||  ||||| |||||||||| |||||||    
T  4697732 agtggtttcctcaatgaaaatgtgggagacaagcggttcctcaa-tggaagaagtgctgaacgtggag-caggccttttttttagttatttttctatgta 4697635  T
Q  187 aaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
     |||||||||||||||||  | |||||  ||||||||||||    
T  4697634 taaatagtagttttccatatggaaaatgagtcgcaaatcac 4697594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 8141048 - 8140889
Alignment:
Q  66 gaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggcttt 165  Q
    ||||| ||||||||||||| ||||| || |||||  ||| ||||||||||||| | | ||| ||  |||||||| ||| || |||| ||| | ||| |||    
T  8141048 gaagaatttgaatttcaaagagaagcggtttccttgatggaaacgtgggagacgaacagttttc--aatggaaggagtgctaatcgtggagttaggtttt 8140951  T
Q  166 ttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||  ||||||||| ||||| | |||||||||||||||||  | ||||| |||| ||||||||    
T  8140950 tttcagttatttttctatgaataaatagtagttttccatatggaaaattggtcacaaatcac 8140889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 9409029 - 9409185
Alignment:
Q  75 gaatttcaaaaagaagtggattcctcaatgaa-aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatca---ggctttttcta 170  Q
    |||||||||| ||||| || |||||||||| | || |||| |||||| |||||||| | |||||||||||  |||||| || || |   |  |||||| |    
T  9409029 gaatttcaaagagaagcggtttcctcaatggagaatgtggtagacaaacggttgtctacatggaagaagtgttgatcgtgggattatttgtttttttcca 9409128  T
Q  171 gttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||||||| ||||||| ||||||||||||||||| ||  |||  |||||||||||||    
T  9409129 gttattttcctatgtataaatagtagttttccataggggaaacgggtcgcaaatcac 9409185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 16675399 - 16675229
Alignment:
Q  51 ttactgttgaggcatgaagattttgaatttcaaaaagaagtggattcctcaatgaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatc 150  Q
    |||||||||||||  ||| ||||||||||||||| |||||  | |||||  ||| ||||||||| ||||||   || |||||||||||| |||  |||||    
T  16675399 ttactgttgaggcgggaacattttgaatttcaaagagaag-cgtttccttgatggaaacgtgggcgacaagaaatt-tccaaatggaaggagtgatgatc 16675302  T
Q  151 ggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatc 225  Q
    |  || | |||||||||| | |||||||||||  || |||||||||||||||||  ||||||  |||| ||||||    
T  16675301 gcagagttaggctttttccatttattttgcta--tataaatagtagttttccatatgaaaaacgggtcacaaatc 16675229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 16928540 - 16928592
Alignment:
Q  173 tattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatc 225  Q
    |||||| ||||||| ||||| |||||||||||  | |||||||||||||||||    
T  16928540 tattttactatgtataaataatagttttccatatggaaaataggtcgcaaatc 16928592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 21135 - 20982
Alignment:
Q  75 gaatttcaaaa-agaagtggattcctcaat-gaaaacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagt 172  Q
    ||||||||||| ||||| || ||||||||  |||||||||||||||||||||||||| | ||||||| |||  |||||| || || ||  | |||| | |    
T  21135 gaatttcaaaagagaagcggtttcctcaaaagaaaacgtgggagacaagcggttgtcaacatggaaggagtgttgatcgtgggattagtttctttccact 21036  T
Q  173 tattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    || ||| ||||||| |||||||||| |||||| || | ||| |||||||||||||    
T  21035 ta-tttcctatgtataaatagtagtcttccatagggacaatgggtcgcaaatcac 20982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 5147 - 5041
Alignment:
Q  107 aacgtgggagacaagcggttgtccaaatggaagaagtactgatcggggaatcaggctttttctagttattttgctatgtaaaaatagtagttttccatgg 206  Q
    ||||||||||||||  ||||||| | ||||||| ||| ||||||| || |  | |||||||| |||||||||  |||||| ||||||||||||||||| |    
T  5147 aacgtgggagacaaaaggttgtctacatggaaggagtgctgatcgtgggactatgctttttccagttattttattatgtataaatagtagttttccatag 5048  T
Q  207 gaaaaat 213  Q
    | |||||    
T  5047 ggaaaat 5041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 38822 - 38879
Alignment:
Q  170 agttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||||||||||||| |||||||||||||||||  | |||||||||| ||||||||    
T  38822 agttattttgctatgtataaatagtagttttccatatggaaaataggtcacaaatcac 38879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 10202 - 10268
Alignment:
Q  162 ctttttctagttat-tttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    ||||||| |||||| ||| ||||||| ||||||||||||| |||  |||||||||||||||||||||    
T  10202 ctttttcaagttatatttactatgtataaatagtagtttttcatatgaaaaataggtcgcaaatcac 10268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 26836 - 26892
Alignment:
Q  170 agttattttgctatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatca 226  Q
    ||||||||| ||||||| |||||||||||||||||  | ||||| ||||||||||||    
T  26836 agttattttactatgtataaatagtagttttccatatggaaaatgggtcgcaaatca 26892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 6562 - 6516
Alignment:
Q  181 tatgtaaaaatagtagttttccatgggaaaaataggtcgcaaatcac 227  Q
    |||||| ||||||||||||| |||  |||||||||||||||||||||    
T  6562 tatgtataaatagtagtttttcatatgaaaaataggtcgcaaatcac 6516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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