View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_46 (Length: 221)

Name: NF15908_low_46
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_46
NF15908_low_46
[»] chr5 (4 HSPs)
chr5 (118-203)||(4175836-4175921)
chr5 (33-121)||(14591840-14591928)
chr5 (28-121)||(30917461-30917554)
chr5 (33-121)||(19828629-19828717)
[»] chr3 (2 HSPs)
chr3 (33-121)||(40396829-40396917)
chr3 (46-105)||(50232689-50232747)
[»] chr4 (3 HSPs)
chr4 (17-106)||(25871128-25871217)
chr4 (17-121)||(25506234-25506338)
chr4 (17-106)||(16748843-16748932)
[»] chr6 (1 HSPs)
chr6 (17-121)||(31121161-31121265)
[»] chr1 (1 HSPs)
chr1 (33-106)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (16-105)||(13007955-13008044)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 4175836 - 4175921
Alignment:
Q  118 aattcctaagcaatgtagtgttttttggtgtaccggagcaaaaaccaataatgataaatgataaatatctaagataagagaccatc 203  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175836 aattcctaagcaatgtagagttttttggtgtaccgtagcaaaaaccaataatgataaatgataaatatctaagataagagaccatc 4175921  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 14591928 - 14591840
Alignment:
Q  33 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 121  Q
    |||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  14591928 aaaatgaatgaagggctaagatttattcagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaatt 14591840  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 30917461 - 30917554
Alignment:
Q  28 acattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 121  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| ||||| |||||||||||| |||| || ||||| |||||    
T  30917461 acattaaaatgaatgaagggttaagattaattaagatgtcattaaaagaaatggacggctaagattatttcactcgagaaaataggagaaaatt 30917554  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 19828717 - 19828629
Alignment:
Q  33 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 121  Q
    |||||||||||| |||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||||    
T  19828717 aaaatgaatgaagggctaaaattagttaagatgttattaaaatggatggacggctaagattatttcacaggagaaaacatgaggaaatt 19828629  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 40396829 - 40396917
Alignment:
Q  33 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 121  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  40396829 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt 40396917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 50232689 - 50232747
Alignment:
Q  46 ggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 105  Q
    ||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||| ||||    
T  50232689 ggctaagattaattaagatgtcattaaaa-gaatggatggttaagattatttcacaggag 50232747  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 25871217 - 25871128
Alignment:
Q  17 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 106  Q
    ||||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||| || || ||||||||||| |||||    
T  25871217 atgaaaatgacacattgaaatgaatgaaaggctgagattagttaaggtgtcattaaaaggaatggacggttaagattatttcacaggaga 25871128  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 25506338 - 25506234
Alignment:
Q  17 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 116  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  25506338 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 25506239  T
Q  117 aaatt 121  Q
    |||||    
T  25506238 aaatt 25506234  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 16748932 - 16748843
Alignment:
Q  17 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 106  Q
    ||||||| |||||||| ||||||||||||| || |||||| ||||||||| ||||||| ||||||| | ||| ||||||||||| |||||    
T  16748932 atgaaaatgacacattgaaatgaatgaaagactgagattagttaaggtgtcattaaaaagaatggacgactaagattatttcacaggaga 16748843  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 31121161 - 31121265
Alignment:
Q  17 atgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggagg 116  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| |||||    
T  31121161 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggagg 31121260  T
Q  117 aaatt 121  Q
    |||||    
T  31121261 aaatt 31121265  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 50052870 - 50052797
Alignment:
Q  33 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 106  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||||    
T  50052870 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctgagattatttcacaggaga 50052797  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 13007955 - 13008044
Alignment:
Q  16 gatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 105  Q
    ||||| || ||||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||||  || |  |||||||||||||||    
T  13007955 gatgacaatgacacgttaaaatgaatgaagggctaagatcagttaaggtgtcattaaaaggaatggacagccaaaattatttcactggag 13008044  T

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