View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_47 (Length: 217)

Name: NF15908_low_47
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_47
NF15908_low_47
[»] chr8 (9 HSPs)
chr8 (1-82)||(13110060-13110141)
chr8 (1-63)||(18672343-18672405)
chr8 (1-68)||(22713835-22713900)
chr8 (21-68)||(9218029-9218076)
chr8 (20-83)||(27123805-27123868)
chr8 (23-83)||(24680956-24681016)
chr8 (23-57)||(11030507-11030541)
chr8 (23-57)||(41652194-41652228)
chr8 (24-57)||(10600381-10600414)
[»] scaffold0337 (2 HSPs)
scaffold0337 (1-65)||(4415-4477)
scaffold0337 (1-63)||(17090-17150)
[»] chr5 (7 HSPs)
chr5 (21-82)||(19924181-19924242)
chr5 (23-83)||(19926907-19926967)
chr5 (20-83)||(24878240-24878303)
chr5 (23-57)||(25667468-25667502)
chr5 (21-68)||(23355534-23355581)
chr5 (22-57)||(24308930-24308965)
chr5 (22-57)||(24364361-24364396)
[»] chr1 (4 HSPs)
chr1 (21-83)||(20866107-20866169)
chr1 (21-68)||(17615144-17615191)
chr1 (15-68)||(36571895-36571948)
chr1 (23-53)||(16083534-16083564)
[»] chr7 (7 HSPs)
chr7 (17-57)||(18084167-18084207)
chr7 (15-68)||(10649456-10649509)
chr7 (18-81)||(2546864-2546927)
chr7 (22-57)||(9022737-9022772)
chr7 (23-57)||(7524926-7524960)
chr7 (23-57)||(11994123-11994157)
chr7 (22-54)||(41131801-41131833)
[»] chr3 (8 HSPs)
chr3 (1-68)||(8737384-8737449)
chr3 (1-68)||(9089622-9089687)
chr3 (15-68)||(5495424-5495477)
chr3 (23-57)||(14132283-14132317)
chr3 (23-57)||(25321075-25321109)
chr3 (23-57)||(44451072-44451106)
chr3 (24-57)||(27718178-27718211)
chr3 (18-66)||(24699282-24699330)
[»] chr2 (5 HSPs)
chr2 (15-83)||(31404256-31404324)
chr2 (21-81)||(25520604-25520664)
chr2 (21-83)||(24543754-24543816)
chr2 (21-57)||(17402678-17402714)
chr2 (18-66)||(20489537-20489585)
[»] chr6 (5 HSPs)
chr6 (1-57)||(14763167-14763221)
chr6 (15-83)||(17296373-17296441)
chr6 (22-57)||(9404619-9404654)
chr6 (21-55)||(18713595-18713629)
chr6 (23-57)||(34992233-34992267)
[»] scaffold0142 (1 HSPs)
scaffold0142 (18-82)||(20424-20488)
[»] chr4 (5 HSPs)
chr4 (21-57)||(6337875-6337911)
chr4 (15-57)||(4697335-4697377)
chr4 (22-57)||(41457421-41457456)
chr4 (15-57)||(16674967-16675009)
chr4 (22-55)||(9354661-9354694)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13110060 - 13110141
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgaca 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  13110060 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatggcgtttttcgaca 13110141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18672405 - 18672343
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagac 63  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  18672405 tttaagaaaataaggagtgtgtgttcatcaaattcataggttgctttatgaacaagacgagac 18672343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 22713900 - 22713835
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22713900 tttaagaaaata--gagtttgcgttcatcaaattcataggttgctttatgaacaagacgagaccgtat 22713835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 9218029 - 9218076
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  9218029 gcgttcatcaagttcataggttgctttacgaacaagaggagaccgtat 9218076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 27123868 - 27123805
Alignment:
Q  20 tgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    ||||||||||||||||||||||| |||||||||||||| ||| | |||| | || |||||||||    
T  27123868 tgcgttcatcaaattcataggtttctttatgaacaagacgagtctgtatggcgtctttcgacag 27123805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 24681016 - 24680956
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    |||||||||||| |||||||| ||||||||||||| || ||||||| | || |||||||||    
T  24681016 gttcatcaaattgataggttgatttatgaacaagacgaaaccgtatggtgtctttcgacag 24680956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 11030507 - 11030541
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||| ||||||||||||||||||||||||||||||    
T  11030507 gttcgtcaaattcataggttgctttatgaacaaga 11030541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 41652228 - 41652194
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||| ||||||||||||||||||||||||||    
T  41652228 gttcatcatattcataggttgctttatgaacaaga 41652194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 10600414 - 10600381
Alignment:
Q  24 ttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||||||||||||||||| ||||||||||||||    
T  10600414 ttcatcaaattcataggttactttatgaacaaga 10600381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4415 - 4477
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccg 65  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  4415 tttaagaaaata--gagtttgcgttcatcaaattcataggttgctttatgaacaagacgagaccg 4477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17090 - 17150
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagac 63  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||    
T  17090 tttaagaaaata--gagtttgcgttcatcaaattcataggttgctttatgaacaagacgagac 17150  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 19924242 - 19924181
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgaca 82  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||    
T  19924242 gcgttcatcaaattcataggttgctttatgaacaagacgaaaccgtatggagtctttcgaca 19924181  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 19926967 - 19926907
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| |||| |||||||||    
T  19926967 gttcatcaaattcataggttgctttatgaacaagacgaaaccgtatggagtctttcgacag 19926907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 24878240 - 24878303
Alignment:
Q  20 tgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||| | || |||||||||    
T  24878240 tgcgttcatcaaattcataggttactttatgaacaagacgagaccgtatggcgtctttcgacag 24878303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 25667502 - 25667468
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||||||||||||||||||||||||||||    
T  25667502 gttcatcaaattcataggttgctttatgaacaaga 25667468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 23355534 - 23355581
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    ||||||||||| |||||||||||||||| |||||||| || |||||||    
T  23355534 gcgttcatcaagttcataggttgctttacgaacaagacgaaaccgtat 23355581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 24308930 - 24308965
Alignment:
Q  22 cgttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24308930 cgttcatcatattcataggttgctttatgaacaaga 24308965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 24364396 - 24364361
Alignment:
Q  22 cgttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24364396 cgttcatcatattcataggttgctttatgaacaaga 24364361  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 20866107 - 20866169
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||| | ||| ||||||||    
T  20866107 gcgttcatcaaattcataggttgctttatgaacaagacgagatcgtatggtgttcttcgacag 20866169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 17615144 - 17615191
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  17615144 gcgttcatcaaattcataggttgctttatgaacaagacgagactgtat 17615191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 36571948 - 36571895
Alignment:
Q  15 gagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    |||| |||||||||||| |||||||||||||||||||||| || ||||||||||    
T  36571948 gagtttgcgttcatcaagttcataggttgctttatgaacaggacgagaccgtat 36571895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 16083534 - 16083564
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaac 53  Q
    |||||||||||||||||||||||||||||||    
T  16083534 gttcatcaaattcataggttgctttatgaac 16083564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 18084167 - 18084207
Alignment:
Q  17 gtgtgcgttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18084167 gtgtgcgttcatcaaattcataggttgctttatgaacaaga 18084207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 10649509 - 10649456
Alignment:
Q  15 gagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||| ||||||    
T  10649509 gagtgtgcgttcatcaaattcatagggtactttatgaacaagatgagtccgtat 10649456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 2546864 - 2546927
Alignment:
Q  18 tgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgac 81  Q
    |||||||||||||| |||||||||||||||| ||||| || |||||||||| | || |||||||    
T  2546864 tgtgcgttcatcaagttcataggttgctttacgaacaggatgagaccgtatggcgtctttcgac 2546927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 9022772 - 9022737
Alignment:
Q  22 cgttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  9022772 cgttcatcaaattcataggttgctttatgaacaaga 9022737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 7524960 - 7524926
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||||||||||||||||||| ||||||||    
T  7524960 gttcatcaaattcataggttgctttacgaacaaga 7524926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 11994157 - 11994123
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||| ||||||||||||||||||||||||||    
T  11994157 gttcatcatattcataggttgctttatgaacaaga 11994123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 41131801 - 41131833
Alignment:
Q  22 cgttcatcaaattcataggttgctttatgaaca 54  Q
    ||||||||||||||||||| |||||||||||||    
T  41131801 cgttcatcaaattcataggctgctttatgaaca 41131833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8737449 - 8737384
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    ||||||||||||  |||| | ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  8737449 tttaagaaaata--gagtttacgttcattaaattcataggtttctttatgaacaagaagagaccgtat 8737384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9089687 - 9089622
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    ||||||||||||  |||| | ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  9089687 tttaagaaaata--gagtttacgttcattaaattcataggtttctttatgaacaagaagagaccgtat 9089622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 5495424 - 5495477
Alignment:
Q  15 gagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtat 68  Q
    |||||||| |||||| |||||||| |||||||||||||||||| ||| ||||||    
T  5495424 gagtgtgcattcatccaattcataagttgctttatgaacaagacgagtccgtat 5495477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 14132317 - 14132283
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||||||||||||| ||||||||||||||    
T  14132317 gttcatcaaattcataggtttctttatgaacaaga 14132283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 25321075 - 25321109
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||| ||||||||||||||||||||||||||    
T  25321075 gttcatcatattcataggttgctttatgaacaaga 25321109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 44451106 - 44451072
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||| ||||||||||||||||||||||||||    
T  44451106 gttcatcatattcataggttgctttatgaacaaga 44451072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 27718211 - 27718178
Alignment:
Q  24 ttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||||||||||||||||||||| |||||    
T  27718211 ttcatcaaattcataggttgctttatgagcaaga 27718178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 24699330 - 24699282
Alignment:
Q  18 tgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgt 66  Q
    |||||||||||||| ||||||||||| |||| ||||| || ||||||||    
T  24699330 tgtgcgttcatcaagttcataggttgttttacgaacaggacgagaccgt 24699282  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 31404324 - 31404256
Alignment:
Q  15 gagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||| |||||| | || |||||||||    
T  31404324 gagtgagcgttcatcaaattcataggttgctttatgaacaacatgagtccgtatggtgtctttcgacag 31404256  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 25520664 - 25520604
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgac 81  Q
    ||||||||||| |||||||||| ||||| |||||||| |||||||||| | ||||||||||    
T  25520664 gcgttcatcaagttcataggtttctttacgaacaagacgagaccgtatggtgtttttcgac 25520604  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 24543754 - 24543816
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    ||||||||||| |||||||||||||| ||||||| || |||||||||| | || |||||||||    
T  24543754 gcgttcatcaagttcataggttgcttaatgaacaggacgagaccgtatggcgtctttcgacag 24543816  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 17402678 - 17402714
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  17402678 gcgttcatcaagttcataggttgctttacgaacaaga 17402714  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 20489585 - 20489537
Alignment:
Q  18 tgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgt 66  Q
    |||||||||||||| |||||||||| ||||| |||||||  ||||||||    
T  20489585 tgtgcgttcatcaagttcataggtttctttacgaacaagtcgagaccgt 20489537  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14763221 - 14763167
Alignment:
Q  1 tttaagaaaataaggagtgtgcgttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||    
T  14763221 tttaagaaaata--gagtttgcgttcatcaagttcataggttgctttatgaacaaga 14763167  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 17296441 - 17296373
Alignment:
Q  15 gagtgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgacag 83  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||  |||| | | ||||||||||||    
T  17296441 gagtgagcgttcatcaaattcagaggttgctttatgaacaagacgaatccgtgtggcgtttttcgacag 17296373  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 9404619 - 9404654
Alignment:
Q  22 cgttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||| |||||||||||||||||||||||||    
T  9404619 cgttcatcaatttcataggttgctttatgaacaaga 9404654  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 18713595 - 18713629
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaa 55  Q
    ||||||||||||||||||||| |||||||||||||    
T  18713595 gcgttcatcaaattcataggtagctttatgaacaa 18713629  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 34992233 - 34992267
Alignment:
Q  23 gttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||| ||||||||||||||||||||||||||    
T  34992233 gttcatcatattcataggttgctttatgaacaaga 34992267  T

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Target: scaffold0142 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 20424 - 20488
Alignment:
Q  18 tgtgcgttcatcaaattcataggttgctttatgaacaagaagagaccgtatagagtttttcgaca 82  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| || ||| | || ||||||||    
T  20424 tgtgcgctcatcaaattcataggttgctttatgaacaagacgagtccatatggcgtctttcgaca 20488  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 6337875 - 6337911
Alignment:
Q  21 gcgttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  6337875 gcgttcatcaaattcataggttgctttatgaacaaga 6337911  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 4697335 - 4697377
Alignment:
Q  15 gagtgtgcgttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||| || ||||||||||||||||||||||||||||||||||    
T  4697335 gagtgagcattcatcaaattcataggttgctttatgaacaaga 4697377  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 41457421 - 41457456
Alignment:
Q  22 cgttcatcaaattcataggttgctttatgaacaaga 57  Q
    |||||||||||||||||||||| |||||||||||||    
T  41457421 cgttcatcaaattcataggttgttttatgaacaaga 41457456  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 16674967 - 16675009
Alignment:
Q  15 gagtgtgcgttcatcaaattcataggttgctttatgaacaaga 57  Q
    ||||| || ||||||||||| ||||||||||||||||||||||    
T  16674967 gagtgcgccttcatcaaatttataggttgctttatgaacaaga 16675009  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 9354694 - 9354661
Alignment:
Q  22 cgttcatcaaattcataggttgctttatgaacaa 55  Q
    |||||||||||||||||||||| |||||||||||    
T  9354694 cgttcatcaaattcataggttgttttatgaacaa 9354661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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