View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_low_51 (Length: 209)
Name: NF15908_low_51
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 2022265 - 2022088
Alignment:
| Q |
20 |
gctgatgtttcagttgttgttgcagaagcatattgaaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatga |
119 |
Q |
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| T |
2022265 |
gctgatgtttcagttgttgttgcagaagcatattgaaaccaggctgatgggtatttagatttggttggattacatttaccccaccttgtgacggtaatga |
2022166 |
T |
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| Q |
120 |
attgacgttggtctgttgggtattaatagtgttttgagatctattctccattgttagcattttcgtagatattcttcg |
197 |
Q |
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| T |
2022165 |
aatgatgttggtctgttgggtattaacactgttttgagatctattctccattgttagcattttcgtagatatttttcg |
2022088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 2042602 - 2042467
Alignment:
| Q |
20 |
gctgatgtttcagttgttgttgcagaagcatattgaaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatga |
119 |
Q |
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||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2042602 |
gctgatgtttcagttgttgctgctgaagcatattggaacctggctgatgggtatttagatttggttggattacatttaccccaccttgtgacggtaatga |
2042503 |
T |
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| Q |
120 |
attgacgttggtctgttgggtattaatagtgttttg |
155 |
Q |
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| T |
2042502 |
attgatgttggtatgttgggtattaacagtgttttg |
2042467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 2019529 - 2019480
Alignment:
| Q |
148 |
gtgttttgagatctattctccattgttagcattttcgtagatattcttcg |
197 |
Q |
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| T |
2019529 |
gtgttttgagatttaatctccattgttagcattttcgtagatattgttcg |
2019480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 2036258 - 2036209
Alignment:
| Q |
148 |
gtgttttgagatctattctccattgttagcattttcgtagatattcttcg |
197 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
2036258 |
gtgttttgagatttattctccattgttagcattttcatagatatttttcg |
2036209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 1990563 - 1990514
Alignment:
| Q |
148 |
gtgttttgagatctattctccattgttagcattttcgtagatattcttcg |
197 |
Q |
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| T |
1990563 |
gtgttttgagatttattctccattgttaccattttcaaagatatttttcg |
1990514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 48204499 - 48204664
Alignment:
| Q |
20 |
gctgatgtttcagttgttgttgcagaagcatattgaaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatga |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
48204499 |
gctgatgtttcagttgttgttgttgaagcatattgaaacctggctgatgggtatttagatttggttggattac-----ccccaccttgtgacggtaatga |
48204593 |
T |
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| Q |
120 |
attgacgttggtctgttgggtattaatagtgttttgagatctattctccattgttagcattttcgtagata |
190 |
Q |
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||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
48204594 |
attgatgttggtctgttggggattaacggtgttttgagatttattctccattgttagcattttcatagata |
48204664 |
T |
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