View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15908_low_53 (Length: 201)

Name: NF15908_low_53
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15908_low_53
NF15908_low_53
[»] chr2 (14 HSPs)
chr2 (13-201)||(9756071-9756259)
chr2 (13-201)||(9756191-9756379)
chr2 (71-201)||(9755778-9755908)
chr2 (69-201)||(9781318-9781450)
chr2 (96-201)||(9783155-9783260)
chr2 (13-83)||(9755840-9755910)
chr2 (98-197)||(9783238-9783337)
chr2 (97-201)||(9756035-9756139)
chr2 (13-84)||(9756311-9756382)
chr2 (14-84)||(9781383-9781453)
chr2 (116-197)||(9783406-9783487)
chr2 (109-180)||(9783303-9783374)
chr2 (104-182)||(9783325-9783403)
chr2 (104-196)||(9783475-9783567)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 9756071 - 9756259
Alignment:
Q  13 gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccaccatctgttgatgctccttcatcaccccctt 112  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9756071 gctccttcgacaccacaagttgtgattgatcctacaacactaccaccttcaacaactcattccacaccaccatctgttgatgctccttcatcaccccctt 9756170  T
Q  113 cgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttccacacca 201  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9756171 ctacaccaccaactacggtagctccttcgacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttcaacacca 9756259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 9756191 - 9756379
Alignment:
Q  13 gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccaccatctgttgatgctccttcatcaccccctt 112  Q
    ||||||||||||||||||  | ||||||||||||| |||| ||||||||||||| ||||||| ||||||||| | ||| ||| ||||||| |||||||||    
T  9756191 gctccttcgacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttcaacaccaccacccgttcatgatccttcaacaccccctt 9756290  T
Q  113 cgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttccacacca 201  Q
    | |||||||||| | ||||||||||||| |||||||||||  ||||| ||||||||| |||||||||||||||||||||| ||||||||    
T  9756291 ccacaccaccaattgcggtagctccttcgacaccaccatccgtggttaatcctacgataccaccaccttcaacacctcctaccacacca 9756379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 9755778 - 9755908
Alignment:
Q  71 cttccacaccaccatctgttgatgctccttcatcacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgac 170  Q
    |||||||||||||| |||| |  ||||||||| |||||||||| |||||||||| ||||||||||||||| ||| |||||  |  ||||||||| |||||    
T  9755778 cttccacaccaccacctgtggtcgctccttcaacacccccttccacaccaccaattacggtagctccttcgacatcaccagttgcggttgatccaacgac 9755877  T
Q  171 accaccaccttcaacacctccttccacacca 201  Q
    || |||||||||||||||||| |||||||||    
T  9755878 actaccaccttcaacacctccatccacacca 9755908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 9781318 - 9781450
Alignment:
Q  69 tccttccacaccaccatctgttgatgctccttcatcacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacg 168  Q
    |||||||  ||||||| | ||| ||||||||||| |||||||||| |||||||||| || |||| ||||||| |||| |||| || |||||||||||       
T  9781318 tccttccctaccaccacccgttcatgctccttcaacacccccttccacaccaccaattatggtatctccttcgacacaaccacctgtggttgatcctttc 9781417  T
Q  169 acaccaccaccttcaacacctccttccacacca 201  Q
    |||||||||||||| ||||||||||||||||||    
T  9781418 acaccaccaccttcgacacctccttccacacca 9781450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 9783155 - 9783260
Alignment:
Q  96 tccttcatcacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttcc 195  Q
    ||||||| |||| ||||| |||||||||| || |||||||||||| ||||||||| |  ||||||||||| | ||||||||| |||||||||| | ||||    
T  9783155 tccttcaacacctccttccacaccaccaattatggtagctccttcaacaccaccacccgtggttgatccttccacaccaccatcttcaacacccctttcc 9783254  T
Q  196 acacca 201  Q
    ||||||    
T  9783255 acacca 9783260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 9755840 - 9755910
Alignment:
Q  13 gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccacc 83  Q
    |||||||||||| ||||||||| ||||||||| || |||||||||||||||||| |||| |||||||||||    
T  9755840 gctccttcgacatcaccagttgcggttgatccaacgacactaccaccttcaacacctccatccacaccacc 9755910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 9783238 - 9783337
Alignment:
Q  98 cttcatcacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttccac 197  Q
    ||||| |||||| ||| ||||||||||||| ||| |||||| | |||| |||| |  ||||||||||| | ||||||||| |||| ||||||||||||||    
T  9783238 cttcaacacccctttccacaccaccaactatggttgctcctacgacacaaccacccatggttgatccttccacaccaccaacttcgacacctccttccac 9783337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 9756035 - 9756139
Alignment:
Q  97 ccttcatcacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttcca 196  Q
    |||||| |||| ||||| || ||||||||  || |||||||||| ||||||| |  | || |||||||||| |||| ||||||||||||| ||| |||||    
T  9756035 ccttcaacacctccttccacgccaccaaccgcgatagctccttcgacaccacaagttgtgattgatcctacaacactaccaccttcaacaactcattcca 9756134  T
Q  197 cacca 201  Q
    |||||    
T  9756135 cacca 9756139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 9756311 - 9756382
Alignment:
Q  13 gctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccacca 84  Q
    ||||||||||||||||||   |||||| ||||||| | || ||||||||||||| ||||| |||||||||||    
T  9756311 gctccttcgacaccaccatccgtggttaatcctacgataccaccaccttcaacacctcctaccacaccacca 9756382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 9781383 - 9781453
Alignment:
Q  14 ctccttcgacaccaccagttgtggttgatcctacaacactaccaccttcaacaactccttccacaccacca 84  Q
    |||||||||||| ||||  |||||||||||||   |||| ||||||||| ||| |||||||||||||||||    
T  9781383 ctccttcgacacaaccacctgtggttgatcctttcacaccaccaccttcgacacctccttccacaccacca 9781453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 9783406 - 9783487
Alignment:
Q  116 caccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttccac 197  Q
    ||||||||| || |||||||||||  ||||||| | |  ||||||||||| | |||||||||| ||| ||||||||||||||    
T  9783406 caccaccaattatggtagctcctttgacaccacgacccatggttgatccttccacaccaccactttcgacacctccttccac 9783487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 9783303 - 9783374
Alignment:
Q  109 ccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccacct 180  Q
    ||||| |||||||||||| ||  | |||||||||| |||||| || |||||| |||| ||||||||||||||    
T  9783303 ccttccacaccaccaacttcgacacctccttccaccccaccaactatggttgctccttcgacaccaccacct 9783374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 9783325 - 9783403
Alignment:
Q  104 cacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttc 182  Q
    |||| ||||| || |||||||||| ||| |||||||| ||||||||| || ||||||||||| | |||| ||| |||||    
T  9783325 cacctccttccaccccaccaactatggttgctccttcgacaccaccacctgtggttgatccttccacacgacctccttc 9783403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 9783475 - 9783567
Alignment:
Q  104 cacccccttcgacaccaccaactacggtagctccttccacaccaccatctttggttgatcctacgacaccaccaccttcaacacctccttcca 196  Q
    |||| ||||| || ||||||||||   |||||||||| ||| ||||  |  |||||||||||  || ||||| ||||||||||||||||||||    
T  9783475 cacctccttccaccccaccaactataatagctccttcaacagcacctcccatggttgatcctttgaaaccactaccttcaacacctccttcca 9783567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University