View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15909_low_1 (Length: 302)
Name: NF15909_low_1
Description: NF15909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15909_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 26962228 - 26961954
Alignment:
| Q |
19 |
caccatgcactttaggaggaatatggatatggaactcttgggcatgataatgtgatcatagggctgtccgtgattgatacagtttccgttgaagagaaag |
118 |
Q |
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| T |
26962228 |
caccatgcactttaggaggaatatggatatggaactcttgggcatgataatgtgatcatagggctgtccgtgattgatacagtttccgttgaagagaaag |
26962129 |
T |
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| Q |
119 |
aatgcctaatatcttcatataagcaatgtttcttggcttttccttgagaaaatgttggatcaccatcttccttggaaccatcatctagaagtttatgaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26962128 |
aatgcctaatatcttcatataagcaatgtttcttggcttttccttgagaaaatgttggatcaccatcttccttggaaccatcatctagaagtttatgaag |
26962029 |
T |
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| Q |
219 |
ccatggtggtcgactattttcatcatacccgtaatcaaagataagctccttcccagcttcaatatgttcctttgc |
293 |
Q |
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| T |
26962028 |
ccatggtggtcgactattttcatcatacccgtaatcaaagaaaagctcctccccaacttcaatacgttcctttgc |
26961954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 26941709 - 26941983
Alignment:
| Q |
19 |
caccatgcactttaggaggaatatggatatggaactcttgggcatgataatgtgatcatagggctgtccgtgattgatacagtttccgttgaagagaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26941709 |
caccatgcactttaggaggaatatggatatggaactcttgggcatgataatgtgatcatagggctgtccgtgattgatacagtttccgttgaagagaaag |
26941808 |
T |
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| Q |
119 |
aatgcctaatatcttcatataagcaatgtttcttggcttttccttgagaaaatgttggatcaccatcttccttggaaccatcatctagaagtttatgaag |
218 |
Q |
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| T |
26941809 |
aatgcctaatatcttcatataagcaatgtttcttggcttttccttgagaaaatgttgaatcaccttcttccttggaaccatcatctagaagtttatgaag |
26941908 |
T |
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| Q |
219 |
ccatggtggtcgactattttcatcatacccgtaatcaaagataagctccttcccagcttcaatatgttcctttgc |
293 |
Q |
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| T |
26941909 |
ccatggtggtcgactattttcatcatacccgtaatcaaagaaaagctcctccccagcttcaatacgttcctttgc |
26941983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 293
Target Start/End: Complemental strand, 26943133 - 26942984
Alignment:
| Q |
143 |
aatgtttcttggcttttccttgagaaaatgttggatcaccatcttccttggaaccatcatctagaagtttatgaagccatggtggtcgactattttcatc |
242 |
Q |
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| T |
26943133 |
aatgtttcttggcttttccttgagaaa-tgttggatcatcatcttccttcgaaccatcatctagaagtttatgaagccatggtggtcgactattttcatc |
26943035 |
T |
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| Q |
243 |
atacccgtaatcaaagataagctccttcccagcttcaatatgttcctttgc |
293 |
Q |
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| T |
26943034 |
atacccgtaattaaagaaaagctcctccccagtttcaatacgttcctttgc |
26942984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 293
Target Start/End: Original strand, 26960807 - 26960956
Alignment:
| Q |
143 |
aatgtttcttggcttttccttgagaaaatgttggatcaccatcttccttggaaccatcatctagaagtttatgaagccatggtggtcgactattttcatc |
242 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26960807 |
aatgtttcttggcttttccttgagaaa-tgttggatcatcatcttccttcgaaccatcatctagaagtttatgaagccatggtggtcgactattttcatc |
26960905 |
T |
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| Q |
243 |
atacccgtaatcaaagataagctccttcccagcttcaatatgttcctttgc |
293 |
Q |
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| T |
26960906 |
atacccgtaattaaagaaaagctcctccccagtttcaatacgttcctttgc |
26960956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 44824995 - 44825148
Alignment:
| Q |
140 |
agcaatgtttcttggcttttccttgagaaaatgttggatcaccatcttccttggaaccatcatctagaagtttatgaagccatggtggtcgactattttc |
239 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
44824995 |
agcaatgtttcttggcttttgcttgagaaaatgttgcatcatcatcttccttggaaccatcatctagaagtctatgaagccatggtggtcgactatcttc |
44825094 |
T |
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| Q |
240 |
atcatacccgtaatcaaagataagctccttcccagcttcaatatgttcctttgc |
293 |
Q |
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| T |
44825095 |
atcatacccgtaatcaaagaaaagctcctccccagcttcaatgcgttcctttgc |
44825148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 36672157 - 36672095
Alignment:
| Q |
34 |
gaggaatatggatatggaactcttgggcatgataatgtgatcatagggctgtccgtgattgat |
96 |
Q |
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|||| ||||| |||| |||||| | ||||||||||||||||||||||| |||||| ||||||| |
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| T |
36672157 |
gaggcatatgaatatcgaactcctaggcatgataatgtgatcatagggttgtccgcgattgat |
36672095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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