View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15909_low_2 (Length: 287)
Name: NF15909_low_2
Description: NF15909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15909_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 1556514 - 1556769
Alignment:
| Q |
16 |
ctctctcccttgtaaaatggaaatcacacacttgttgttctatattcatttaacatgtcttatatacacacaatgatcactactttgttgtgcataggag |
115 |
Q |
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| T |
1556514 |
ctctctcccttgtaaaatggaaatcacacacttgttgttctatattcatttaacatgtcttatatacacacaatgatcactactttgttgtgcataggag |
1556613 |
T |
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| Q |
116 |
tgatgactcgataatttggtatattttgatgggtcatgtgcatagatggtgtagaaatctatcaaacaacttaaatcgacttgttgaagcgaattgaaaa |
215 |
Q |
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| T |
1556614 |
tgatgactcgataatttggtatattttgatgggtcatgtgcatagatggtgtagaaatctatcaaacaacttaaatcgacttgttgaagcgaattgaaaa |
1556713 |
T |
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| Q |
216 |
tcgagatatgagcaatttgaaaggtggtttagttggagaagggagtttttcgtctg |
271 |
Q |
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| T |
1556714 |
tcgagatatgagcaatttgaaaggtggtttagttggagaagggagtttttcgtctg |
1556769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 1460409 - 1460180
Alignment:
| Q |
16 |
ctctctcccttgtaaaatggaaatcacacacttgttgttctatattcatttaacatgtcttatatacacacaatgatcactactttgttgtgcataggag |
115 |
Q |
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| T |
1460409 |
ctctctcccttgtaaaatggaaatcacacacttgttgttctatattcatttaacatgtcttatatacacacaatgatcactactttgttgtgcataggag |
1460310 |
T |
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| Q |
116 |
tgatgactcgataatttggtatattttgatgggtcatgtgcatagatggtgtagaaatctatcaaacaacttaaatcgacttgttgaagcgaattgaaaa |
215 |
Q |
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| T |
1460309 |
tgatgactcgataatttggtatattttgatgggtcatgtgcatagatggtgtagaaatctatcaaacaacttaaatcgacttgttgaagcgaattgaaaa |
1460210 |
T |
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| Q |
216 |
tcgagatatgagcaatttgaaaggtggttt |
245 |
Q |
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| T |
1460209 |
tcgagatatgagcaatttgaaaggtggttt |
1460180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 1453721 - 1453642
Alignment:
| Q |
26 |
tgtaaaatggaaatcacacacttgttg-ttctatattcatttaacatgtcttatatacacacaatgatcactactttgtt |
104 |
Q |
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| T |
1453721 |
tgtaaaatggaaataacacacttgttaattctatattcagttgacatgtcttatattcacacaatgatcactactttgtt |
1453642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 1568002 - 1568075
Alignment:
| Q |
26 |
tgtaaaatggaaatcacacacttgttgttctatattcatttaacatgtcttatatacacacaatgatcactactt |
100 |
Q |
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| T |
1568002 |
tgtaaaatggaaat-acgtacttgttattctataaccacttgacatgtcttatatgcacacaatgatcactactt |
1568075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 1529018 - 1529070
Alignment:
| Q |
188 |
aaatcgacttgttgaagcgaattgaaaatcgagatatgagcaatttgaaaggt |
240 |
Q |
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| T |
1529018 |
aaatcgacttgttggagtgaattggaaattgagatatgagcaaattgaaaggt |
1529070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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