View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15909_low_3 (Length: 286)
Name: NF15909_low_3
Description: NF15909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15909_low_3 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 40664994 - 40665245
Alignment:
| Q |
16 |
atttcgtatatataaaattgtgatcatataatacttaatttcaatgttnnnnnnntatttgttaatgtggtttatgttgtgttgcagggaaagaaaagga |
115 |
Q |
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| T |
40664994 |
atttcgtatatataaaattgtgatcatataatacttaatttcaatgttaaaaaaatatttgttaatgtggtttatgttgtgttgcagggaaagaaaagga |
40665093 |
T |
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| Q |
116 |
aggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcgagttcggcttggaga |
215 |
Q |
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| T |
40665094 |
aggatagtgtttgtattgctcttggtgatgatacctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcgagttcggcttggaga |
40665193 |
T |
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| Q |
216 |
tgttgtgtctgtgcatcagtgtcctgatgtcaagtatggtaaacgtgtgcac |
267 |
Q |
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| T |
40665194 |
tgttgtgtctgtgcatcagtgtactgatgtcaagtatggtaaacgtgtgcac |
40665245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 71 - 267
Target Start/End: Complemental strand, 40725495 - 40725299
Alignment:
| Q |
71 |
tatttgttaatgtggtttatgttgtgttgcagggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattag |
170 |
Q |
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| T |
40725495 |
tatttgttaatgtggtttatgttgtgttgcagggaaagaaaaggaaggatagtgtttgtattgctcttggtgatgatacctgtgaagagcctaggattag |
40725396 |
T |
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| Q |
171 |
gatgaacaaagttgtgaggtcgaatttgcgagttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatggtaaacgtgtgcac |
267 |
Q |
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| T |
40725395 |
gatgaacaaagttgtgaggtcgaatttgcgagttcggcttggagatgttgtgtctgtgcatcagtgtactgatgtcaagtatggtaaacgtgtgcac |
40725299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 109314 - 109467
Alignment:
| Q |
101 |
agggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
200 |
Q |
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| T |
109314 |
agggtaagaaaaggaaagatactatatgtattgcactcgctgatgaaacatgtgaagagccaaaaataagaatgaacaaggttgtgaggaacaatcttag |
109413 |
T |
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| Q |
201 |
agttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatgg |
254 |
Q |
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| T |
109414 |
ggttaggcttggagatgttgtttcggtgcatcaatgtgctgatgtcaaatatgg |
109467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 41093982 - 41093829
Alignment:
| Q |
101 |
agggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
200 |
Q |
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|||| ||||||||||| |||||| | |||||||| || |||||||| | ||||||||||| | || || |||||||| ||||||||| ||| | | |
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| T |
41093982 |
agggtaagaaaaggaaagatactatatgtattgcactcgctgatgaaacatgtgaagagccaaaaataagaatgaacaaggttgtgaggaacaatcttag |
41093883 |
T |
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| Q |
201 |
agttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatgg |
254 |
Q |
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| T |
41093882 |
ggttaggcttggagatgttgtttcggtgcatcaatgtgctgatgtcaaatatgg |
41093829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 27975937 - 27976090
Alignment:
| Q |
101 |
agggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
200 |
Q |
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|||| |||||||| |||||||| |||||||||| ||||||||||| | ||||||||||| | ||| || ||||| || |||||||| ||| | | |
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| T |
27975937 |
agggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagccaaagataagaatgaataaggttgtgagaaacaatcttag |
27976036 |
T |
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| Q |
201 |
agttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatgg |
254 |
Q |
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| T |
27976037 |
ggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatgg |
27976090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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