View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_high_1 (Length: 729)
Name: NF1590_high_1
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 614; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Complemental strand, 22783527 - 22782833
Alignment:
| Q |
1 |
ggcgaggaaattctaagttttctgtctattatcatggggttagagaagcatgctcttgttggattgcataaagaattcattcaagcattacgtgtgaact |
100 |
Q |
| |
|
||||||||| || |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22783527 |
ggcgaggaacttttaagttctttgtctattattatggggttagagaagcatgctcttgttggattgcataaagaattcattcaagcattacgtgtgaact |
22783428 |
T |
|
| Q |
101 |
attaccctccttgcaacacacctgagcaagtactaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22783427 |
attaccctccttgcaacacacctgagcaagtattaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgg |
22783328 |
T |
|
| Q |
201 |
gttagaaattcgaaacaaaggaaattgggtaccaattaatccaatatta---gatgccatagtcgtcaatatcggagatgttatagaggtatattcattt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22783327 |
gttagaaattcgaaacaaaggaaattgggtaccaattaatccaatattattagatgccatagtcgtcaatatcggagatgttatagaggtatattcattt |
22783228 |
T |
|
| Q |
298 |
ttatcttatctctcaatgtaacaccctcatcttgaaaaagtgaaaatttatcaaatgtggaagatgattcaattgacacataatttgaaatactttaatc |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22783227 |
ttatcttatccctcaatgtaacaccctcatcttgaaaaagtgaaaatttatcaaatgtggaagatgattcaattgacacataatttgaaatactttaatc |
22783128 |
T |
|
| Q |
398 |
aaattttcaatgattaaaatcaaacatacaaatcaattttcacccatattaatcttcaataatagtatggggaaaatggtaagttactttgatcaaatta |
497 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22783127 |
aaatcttcaatgattaaaatcaaacatacaaatcaattttcacccatattaatcttcaataatagtatggggaaaatggtaagttactttgatcaaatta |
22783028 |
T |
|
| Q |
498 |
caatttttcccatactaatctttacaatacctcttgtgtcctttttctaagtttgggcctaaatagtagttgatcttgattaagttccttaatacattat |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22783027 |
caatttttcccatactaatctttacaatacctcttgtgtcctttttctaagtttgggcctaaatagtagttgatcttgattaagttcc-taatacattat |
22782929 |
T |
|
| Q |
598 |
ctagtttatcatacaaatcactcaggtttaaggttaacaaggatatgctgaattcatattcatttctttatnnnnnnnngttaattaattaattat |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
22782928 |
ctagtttatcatacaaatcactcaggtttaaggttaacaaggatatgctgaattcatattaatttctttataaaaaaaagttaattaattaattat |
22782833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 22779080 - 22778793
Alignment:
| Q |
1 |
ggcgaggaaattctaagttttctgtctattatcatggggttagagaagcatgctcttgttggattgcataaagaattcattcaagcattacgtgtgaact |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| | || | ||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
22779080 |
ggcgaggaacttctaagttttctgtctattatcatggggttggagaaacatgctctcgctgaactgcataaagaattaattcaaggtttacgcgtgaact |
22778981 |
T |
|
| Q |
101 |
attaccctccttgcaacacacctgagcaagtactaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgg |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||| ||||| | || ||||||||| |||||||||||| || || ||||||||||||||| ||| |
|
|
| T |
22778980 |
attaccctccttgcaacaaccctgagcaagtattgggtttgagtccacactctgacacaaccaccattaccttacttattcaagatgatgatgtgcttgg |
22778881 |
T |
|
| Q |
201 |
gttagaaattcgaaacaaaggaaattgggtaccaattaatccaatattagatgccatagtcgtcaatatcggagatgttatagaggta |
288 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| ||||||| |||||| |||| ||||| | |||||||||||||||||| |
|
|
| T |
22778880 |
attagaaatcagaaacaaaggaaattgggtaccggttaaaccaatatcagatgctctagttatcaatgttggagatgttatagaggta |
22778793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 22766405 - 22766121
Alignment:
| Q |
4 |
gaggaaattctaagttttctgtctattatcatggggttagagaagcatgctcttgttggattgcataaagaattcattcaagcattacgtgtgaactatt |
103 |
Q |
| |
|
|||||| ||||||||| | ||||| |||| |||||||| ||||| ||||||||| |||| ||||||||||||| ||||| | |||||| ||||||| |
|
|
| T |
22766405 |
gaggaacttctaagttctttgtctcttattatggggttggagaaacatgctctttttgggatgcataaagaattacttcaatgttcacgtgtaaactatt |
22766306 |
T |
|
| Q |
104 |
accctccttgcaacacacctgagcaagtactaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgggtt |
203 |
Q |
| |
|
||||| | |||||||||||||| |||||| | ||| |||| || || ||||||||||||||||||||| | || |||||||||||||||||| ||||||| |
|
|
| T |
22766305 |
accctacatgcaacacacctgatcaagtattgggtttgagctcacactctgacacaggcaccattaccattcttatgcaagatgatgatgtgcctgggtt |
22766206 |
T |
|
| Q |
204 |
agaaattcgaaacaaaggaaattgggtaccaattaatccaatattagatgccatagtcgtcaatatcggagatgttatagaggta |
288 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| |||||||| |||||| | || |||||| | |||||||||||||||||| |
|
|
| T |
22766205 |
agaaattcgaaacaaaggaaattgggttccagttattccaatatcagatgctcttgttgtcaatgttggagatgttatagaggta |
22766121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 22775915 - 22775638
Alignment:
| Q |
11 |
ttctaagttttctgtctattatcatggggttagagaagcatgctcttgttggattgcataaagaattcattcaagcattacgtgtgaactattaccctcc |
110 |
Q |
| |
|
||||||||| | ||||| |||| |||||||| || || |||| ||||| |||| ||||||||||| | |||| | ||||||||||||||||||||||| |
|
|
| T |
22775915 |
ttctaagttctttgtctgttattatggggttggaaaaacatgttcttgctggactgcataaagaagtacttcagggtttacgtgtgaactattaccctcc |
22775816 |
T |
|
| Q |
111 |
ttgcaacacacctgagcaagtactaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgggttagaaatt |
210 |
Q |
| |
|
|||| |||||||||||||||| | ||| ||||| | || || ||| || |||||||||| || || |||||||||||||||||| |||| ||||||||| |
|
|
| T |
22775815 |
ttgcgacacacctgagcaagtgttgggtttgagtccacactccgactcaagcaccattactttacttatgcaagatgatgatgtgcctggattagaaatt |
22775716 |
T |
|
| Q |
211 |
cgaaacaaaggaaattgggtaccaattaatccaatattagatgccatagtcgtcaatatcggagatgttatagaggta |
288 |
Q |
| |
|
||| | ||||||||||||||||| ||| |||||||| |||||| |||| |||||| |||||||||| ||||||||| |
|
|
| T |
22775715 |
cgacataaaggaaattgggtacccgttactccaatatcagatgctctagttgtcaatgtcggagatgtaatagaggta |
22775638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 16083972 - 16084194
Alignment:
| Q |
11 |
ttctaagttttctgtctattatcatggggttagagaagcatgctcttgttggattgcataaagaattcattcaagcattacgtgtgaactattaccctcc |
110 |
Q |
| |
|
||||||||| | ||||| | || ||||| || ||||||||||||||||||| | | ||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
16083972 |
ttctaagttctttgtctgtaattatgggtttggagaagcatgctcttgttgaactacataaagaagtacttcaaggtttacgtgtgaactattaccctcc |
16084071 |
T |
|
| Q |
111 |
ttgcaacacacctgagcaagtactaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgggttagaaatt |
210 |
Q |
| |
|
||||| || |||||| ||||| ||||| |||| | || | |||| || |||||||||||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
16084072 |
ttgcagcatgcctgagaaagtattaggtttgagaccacactgtgactcaaccaccattaccttacttttgcaagatgatgatgttcctgggttagaaatt |
16084171 |
T |
|
| Q |
211 |
cgaaacaaaggaaattgggtacc |
233 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
16084172 |
cgacacaaaggaaattgggtacc |
16084194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 54 - 290
Target Start/End: Original strand, 23277948 - 23278184
Alignment:
| Q |
54 |
tcttgttggattgcataaagaattcattcaagcattacgtgtgaactattaccctccttgcaacacacctgagcaagtactaggtatgagttcgcattct |
153 |
Q |
| |
|
|||| ||||| | ||||||||| | |||||| ||||||||||||||||| |||||||| |||||||| ||||||||| | || ||| | | || ||| |
|
|
| T |
23277948 |
tcttcttggactacataaagaagtacttcaaggtttacgtgtgaactattatcctccttgtaacacaccagagcaagtaattgggttgactccacactct |
23278047 |
T |
|
| Q |
154 |
gacacaggcaccattaccttgctcatgcaagatgatgatgtgtctgggttagaaattcgaaacaaaggaaattgggtaccaattaatccaatattagatg |
253 |
Q |
| |
|
|| || |||| |||| | | |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
23278048 |
gatgcaagcacagttacaatagttatgcaagacgatgatgtaactgggttagaagttcgatacaaaggaaattgggtaccaattaatccaataccaaatg |
23278147 |
T |
|
| Q |
254 |
ccatagtcgtcaatatcggagatgttatagaggtata |
290 |
Q |
| |
|
| |||| |||||| | |||||||| ||||||||||| |
|
|
| T |
23278148 |
ctttagtggtcaatcttggagatgtaatagaggtata |
23278184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 91 - 288
Target Start/End: Complemental strand, 22770703 - 22770506
Alignment:
| Q |
91 |
cgtgtgaactattaccctccttgcaacacacctgagcaagtactaggtatgagttcgcattctgacacaggcaccattaccttgctcatgcaagatgatg |
190 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||||||||||| ||||| |||| ||||| || | |||||| | | | |||||||| |||| |
|
|
| T |
22770703 |
cgtgtgaactattaccctccttgtaacacacccgagaaagtactaggtgtgagtccgcactctgatccaaggaccattgcaatagttatgcaagacgatg |
22770604 |
T |
|
| Q |
191 |
atgtgtctgggttagaaattcgaaacaaaggaaattgggtaccaattaatccaatattagatgccatagtcgtcaatatcggagatgttatagaggta |
288 |
Q |
| |
|
|||| || ||| |||||||||| ||||| |||||||||||||||||| ||||||| || ||| |||| || ||| | |||||||| ||||||||| |
|
|
| T |
22770603 |
atgtatcagggacagaaattcgatacaaaagaaattgggtaccaattactccaataccaggtgctttagtggttaatgttggagatgtaatagaggta |
22770506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University