View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_100 (Length: 240)
Name: NF1590_high_100
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_100 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 36329645 - 36329856
Alignment:
| Q |
12 |
cacagacaacatcaatnnnnnnngaatgctttgcaaacagaaatataacaatgtggttagtgcttattttatccttaaactccaaaagacacttgaaatt |
111 |
Q |
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| T |
36329645 |
cacagacaacatcaataaaaaaagaatgctttgcaaacagaaatataacaatgtggttagtgcttattttattcttaaactccaaaagacacttgaaatt |
36329744 |
T |
|
| Q |
112 |
tgaatacaggctaaaa-tctcaaaatacatttgaacttaaatttttcatattatgctagtcaagagggttatggcttgtctactacgtcatctcataatg |
210 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36329745 |
tgaatacaggctaaaaatctcaaaatacatttgaacttaaatttttcatattatgctagtcaagagggttatggcttgtctactacgtcatctcataatg |
36329844 |
T |
|
| Q |
211 |
tatcaagaatat |
222 |
Q |
| |
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|||||||||||| |
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| T |
36329845 |
tatcaagaatat |
36329856 |
T |
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