View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_105 (Length: 238)
Name: NF1590_high_105
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_105 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31696885 - 31696664
Alignment:
| Q |
1 |
cgaaactcaagtcggtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgtgt |
100 |
Q |
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| T |
31696885 |
cgaaactcaagttggtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgcgt |
31696786 |
T |
|
| Q |
101 |
gtaggagaataaccgtctccgtgaaatgcgacgcctctaatgcaggcagttaaagatggctccaacggctcagatggctcaaggcgcgctccaatgcagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31696785 |
gtaggagaataaccgtctccgtgaaatgcgacgcctctaatgcaggcagttgaagatggctccaacggctcagatggctcaaggcgcgctccaatgcagt |
31696686 |
T |
|
| Q |
201 |
gccccacgtggagcttaacctg |
222 |
Q |
| |
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|| |||||||||||||| |||| |
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| T |
31696685 |
gctccacgtggagcttagcctg |
31696664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 8019019 - 8019093
Alignment:
| Q |
50 |
aaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgtgtgtaggagaataaccgtctccgtga |
124 |
Q |
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| T |
8019019 |
aaaagtgaatcataccttgggggtgaagctatgtcacccttatataggcgtgtgtgagaataaccgtctccgtga |
8019093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 26888030 - 26887918
Alignment:
| Q |
15 |
gtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgtgtgtaggagaataacc |
114 |
Q |
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| T |
26888030 |
gtatgagaatgaggtggatatgtgcaaaatggggtaaaagtgaattgtaccttgagggtgacactatgtcacccttatatgtgcgtgtaggagaataacc |
26887931 |
T |
|
| Q |
115 |
gtctccgtgaaat |
127 |
Q |
| |
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|||||| |||||| |
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| T |
26887930 |
gtctccatgaaat |
26887918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 48954392 - 48954270
Alignment:
| Q |
6 |
ctcaagtcggtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgtgtgtagg |
105 |
Q |
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| T |
48954392 |
ctcaagttagtatgaaaatgaggtggatatgtgcgaaatggggtaaaagttaattgtgccttgggggtgacgttacatcacccttatataggcgtgtagg |
48954293 |
T |
|
| Q |
106 |
agaataaccgtctccgtgaaatg |
128 |
Q |
| |
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|||||||| | |||||| ||||| |
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| T |
48954292 |
agaataactgcctccgtaaaatg |
48954270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 34954891 - 34954987
Alignment:
| Q |
16 |
tatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgtgtgtaggagaataa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| || ||||||| || | || ||||||||||| |
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| T |
34954891 |
tatgagaatgaggtggatatgtgtgaaatgtggtaaaagtaaatcgtacctttgatgtgacactatgtcacccttatataagcgtataggagaataa |
34954987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 19431371 - 19431493
Alignment:
| Q |
16 |
tatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgtgtgtaggagaataaccg |
115 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||| || | ||||||||| ||| ||||||| || | ||||||||||||| | |
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| T |
19431371 |
tatgagaatgaggtggatatgtgcaaaatgtggtaaaagtgaattgtacattagaggtgacgctatatcacccttatatagttatgtaggagaataaatg |
19431470 |
T |
|
| Q |
116 |
tctccgtgaaatgcgacgcctct |
138 |
Q |
| |
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|||| | ||||||| ||||||| |
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| T |
19431471 |
cctccttaaaatgcggcgcctct |
19431493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 19439936 - 19439984
Alignment:
| Q |
16 |
tatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtac |
64 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
19439936 |
tatgagaatgaggtggatatgtgagaaatgtgttaaaagtgaattgtac |
19439984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 3162579 - 3162517
Alignment:
| Q |
6 |
ctcaagtcggtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttg |
68 |
Q |
| |
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||||||| |||||||||||||||| |||| || |||||| ||||||||||||||| |||||| |
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| T |
3162579 |
ctcaagttagtatgagaatgaggtgaatatatgggaaatgaggtaaaagtgaatcgcaccttg |
3162517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 4156698 - 4156762
Alignment:
| Q |
16 |
tatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgcta |
80 |
Q |
| |
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||||| ||||||||| ||||||||||||| ||||||||||||| ||||| || |||||||||||| |
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| T |
4156698 |
tatgaaaatgaggtgaatatgtgtgaaatatggtaaaagtgaaccgtacattaggagtgacgcta |
4156762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 10685585 - 10685523
Alignment:
| Q |
16 |
tatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgct |
79 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||| |
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| T |
10685585 |
tatgaaaatgaggtggatatgtgtgaaatgaggtaaaagtgaaacttacctt-ggagtgacgct |
10685523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 12200456 - 12200571
Alignment:
| Q |
22 |
aatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacgctacatcgcccttatttatgtgtgtaggagaataaccgtctccg |
121 |
Q |
| |
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||||||||||||||| |||||||| | ||||||||||| ||||| ||| |||||| || || |||||| || | | |||||||||||| ||||||| |
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| T |
12200456 |
aatgaggtggatatgagtgaaatgagataaaagtgaattctacctaggg-gtgacgttatgtcacccttacataggcgcgtaggagaataattgtctccg |
12200554 |
T |
|
| Q |
122 |
tgaaatgcgacgcctct |
138 |
Q |
| |
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|||||| || ||||||| |
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| T |
12200555 |
tgaaatacggcgcctct |
12200571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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