View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_112 (Length: 235)
Name: NF1590_high_112
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_112 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 3005303 - 3005451
Alignment:
| Q |
1 |
aggtcctatgtgtatgtcttgaactgggatttgtctttttgtattactattgattttaatgaatggttcatggagacttggttatttatttttagattat |
100 |
Q |
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| T |
3005303 |
aggtcctatgtgtatgtcttgaactgggatttgtctttttgtattactattgattttaatgaatggttcatggagacttggttatttatttttagattat |
3005402 |
T |
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| Q |
101 |
gctcacttggattttaaattaatcagttagttttatggcttataacttt |
149 |
Q |
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| T |
3005403 |
gctcacttggattttaaattaatcagttagttttatggcttataacttt |
3005451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 3005462 - 3005496
Alignment:
| Q |
188 |
aaaaataatattataaacactaacatcatgttaat |
222 |
Q |
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| T |
3005462 |
aaaaataatattataaacactaacatcatgttaat |
3005496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 7853123 - 7853299
Alignment:
| Q |
3 |
gtcctatgtgtatgtcttgaactgggatttgtctttttgtattactattgattttaatgaatggttcatggagacttggttatttatttttagattatgc |
102 |
Q |
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| T |
7853123 |
gtcctatgtgtatgtcttggactgggatttgtctttatgtattactattgatttgaatgaatgattcatgcatacttggttctttatttttagattatgc |
7853222 |
T |
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| Q |
103 |
tcacttggattttaaattaatcagttagttttatggcttataactttgttatacgtaatgatacaagaaggatccat |
179 |
Q |
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| T |
7853223 |
tcacttggatcttaaattaatcagttagatttatggcttataactttgtcatatgtaatgatacaagaaggatccat |
7853299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 4641599 - 4641533
Alignment:
| Q |
3 |
gtcctatgtgtatgtcttgaactgggatttgtctttttgtattactattgattttaatgaatggttca |
70 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| |||| |
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| T |
4641599 |
gtcctatgtgtatgtcttgaactcagatttgtctttatgtattac-atagatttgaatgaatgattca |
4641533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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