View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_115 (Length: 231)
Name: NF1590_high_115
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_115 |
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Alignment Details
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 2134576 - 2134665
Alignment:
| Q |
132 |
tctaattatatatatccattga----gaaaatgaaacacaaaccaaatatacattttggttttaaagaagttttggtcacaagtcaatat |
217 |
Q |
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| T |
2134576 |
tctaattatatatatctattgaaatagaaaatgaaacacaaaccaaatatacattttggttttaaagaagttttggtcacaagtcaatat |
2134665 |
T |
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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2134446 - 2134515
Alignment:
| Q |
1 |
acttgaccaactacaaaagttaagataaaaatgtattaaaatttatgttccctttacgaaatacatatatg |
71 |
Q |
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| T |
2134446 |
acttgaccaactacaaaagttaagataaaa-tgtattaaaatttatgttccctttacgaaatacatatatg |
2134515 |
T |
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