View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_122 (Length: 218)
Name: NF1590_high_122
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_122 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 43170472 - 43170661
Alignment:
| Q |
13 |
cagaatcataggaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaaggg |
112 |
Q |
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| T |
43170472 |
cagaatcatagaaaccatcggaatcactacaaagaacaactatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaaggg |
43170571 |
T |
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| Q |
113 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac--agacatcaaaaaacatgcaaaattg |
200 |
Q |
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| T |
43170572 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaattg |
43170661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 43217864 - 43217675
Alignment:
| Q |
13 |
cagaatcataggaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaaggg |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43217864 |
cagaatcatagaaaccatcggaatcactacaaagaacaacaatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaaggg |
43217765 |
T |
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| Q |
113 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac--agacatcaaaaaacatgcaaaattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
43217764 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaattg |
43217675 |
T |
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