View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_123 (Length: 217)
Name: NF1590_high_123
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_123 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 43621070 - 43621264
Alignment:
| Q |
11 |
caaaggatactacattgaaccaacaattttctccaatataaaggtgaataacaagtccacaatcaattttt-tatgttaggcataattaataaccattgc |
109 |
Q |
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| T |
43621070 |
caaaggatactatattgaaccaacaattttctccaatataaaggtgaataacaagtccacaatcaatttttgtatgttaggcataattaataaccattgc |
43621169 |
T |
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| Q |
110 |
tttacaaattgtttaactacttgtttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
204 |
Q |
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| T |
43621170 |
tttacaaattgtttaactacttgtttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
43621264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 43627930 - 43628001
Alignment:
| Q |
133 |
tttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
204 |
Q |
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| T |
43627930 |
tttaggaggacatgcttatagcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagtaag |
43628001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 43627784 - 43627821
Alignment:
| Q |
18 |
tactacattgaaccaacaattttctccaatataaaggt |
55 |
Q |
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| T |
43627784 |
tactacattgaacctacaattttctccaatgtaaaggt |
43627821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 32406590 - 32406535
Alignment:
| Q |
149 |
tatagcacaggatgaaatatttggtcctgtgatggcactgaagaagtttaagtaag |
204 |
Q |
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| T |
32406590 |
tatagcacaagatgaaatatttggccctgtcatggcactcatgaagttcaagtaag |
32406535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 32435100 - 32435153
Alignment:
| Q |
134 |
ttaggatgatatggttatagcacaggatgaaatatttggtcctgtgatggcact |
187 |
Q |
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| T |
32435100 |
ttaggatgacatgttaatagcacaagatgaaatatttggacctgttatggcact |
32435153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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