View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_125 (Length: 215)
Name: NF1590_high_125
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_125 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 39641556 - 39641752
Alignment:
| Q |
19 |
ggtatgctactaataatgaattcaagttaataaattggcatgtatgttatatgtgtgatatgaaatgattcaaatagagcatat---------atatacc |
109 |
Q |
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| T |
39641556 |
ggtatgctactaataatgaattcaagttaataaattggcatgtatgttatatgtatgatatgaaatgattcaaatagagcatatatataatatatatacc |
39641655 |
T |
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| Q |
110 |
tatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatcccaagctcttcacactccttaatctgttcatc |
206 |
Q |
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| T |
39641656 |
tatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatcccaagctcttcacactccttaatctgttcatc |
39641752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 39680625 - 39680497
Alignment:
| Q |
78 |
atgaaatgattcaaatagagcatatatatacctatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatccca |
177 |
Q |
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|||| ||||||| || |||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39680625 |
atgatatgattctaaaagagcatatacatacctatcaccaataggcttggtaaaaatctgaagcagagtaccctgatcatctctatcaaccagaatccca |
39680526 |
T |
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| Q |
178 |
agctcttcacactccttaatctgttcatc |
206 |
Q |
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| T |
39680525 |
agctcttcacactccttaatctgttcatc |
39680497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 39637000 - 39637123
Alignment:
| Q |
83 |
atgattcaaatagagcatatatatacctatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatccc-aagct |
181 |
Q |
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|||||||||| ||| ||| || ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
39637000 |
atgattcaaaaagatcat-tacatacctatcaccaataggcttagtaaaaatctgaagcaaagtaccctgatcatctctatcaaccaaaatcccaaagct |
39637098 |
T |
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| Q |
182 |
cttcacactccttaatctgttcatc |
206 |
Q |
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||||||||||||||||||||||||| |
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| T |
39637099 |
cttcacactccttaatctgttcatc |
39637123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 7055513 - 7055614
Alignment:
| Q |
105 |
atacctatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatcccaagctcttcacactccttaatctgttca |
204 |
Q |
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|||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7055513 |
atacctatctccaacaggcttagtgaaaatctgaagaatagtaccctgatcatctctatcaaccaaaattccaagctcttcacactccttaatctgttca |
7055612 |
T |
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| Q |
205 |
tc |
206 |
Q |
| |
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|| |
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|
| T |
7055613 |
tc |
7055614 |
T |
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