View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_high_131 (Length: 209)

Name: NF1590_high_131
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_high_131
NF1590_high_131
[»] chr6 (2 HSPs)
chr6 (1-85)||(31574789-31574873)
chr6 (158-207)||(31574664-31574713)
[»] chr4 (2 HSPs)
chr4 (14-85)||(38029127-38029198)
chr4 (162-209)||(38029002-38029049)
[»] chr3 (1 HSPs)
chr3 (1-83)||(6509593-6509675)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31574873 - 31574789
Alignment:
Q  1 ctcttttcacttcgtaaaattctattagatcaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactctgg 85  Q
    ||||||||||||| |||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31574873 ctcttttcacttcataaatttctataacaacaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactctgg 31574789  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 31574713 - 31574664
Alignment:
Q  158 gttctgtgcagttttttgcgttttgtgtttgattattggtgagaatgttg 207  Q
    |||||||||||||||||| |||| ||||||||||||||| |||| |||||    
T  31574713 gttctgtgcagttttttgtgtttagtgtttgattattggggagattgttg 31574664  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 38029198 - 38029127
Alignment:
Q  14 gtaaaattctattagatcaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactctgg 85  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38029198 gtaaatttctattagatcaactttgtctaaacgaatcaaccactataatcacttggctcttgaaaactctgg 38029127  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 38029049 - 38029002
Alignment:
Q  162 tgtgcagttttttgcgttttgtgtttgattattggtgagaatgttgcg 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  38029049 tgtgcagttttttgcgttttgtgtttgattattggtgagactgttgcg 38029002  T

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Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6509675 - 6509593
Alignment:
Q  1 ctcttttcacttcgtaaaattctattagatcaactttgtctaaacaaatcaaccactataatcacttggctcttgaaaactct 83  Q
    ||||||||||||| |||| |||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6509675 ctcttttcacttcataaatttctataacaacaactttgtctaaacgaatcaaccactataatcacttggctcttgaaaactct 6509593  T

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