View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_132 (Length: 209)
Name: NF1590_high_132
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_132 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 40471405 - 40471579
Alignment:
| Q |
20 |
tcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagt |
119 |
Q |
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| T |
40471405 |
tcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagt |
40471504 |
T |
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| Q |
120 |
tatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
194 |
Q |
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| T |
40471505 |
tatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
40471579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 26332543 - 26332607
Alignment:
| Q |
53 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctcca |
117 |
Q |
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| T |
26332543 |
gtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctcca |
26332607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 16863753 - 16863593
Alignment:
| Q |
20 |
tcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagt |
119 |
Q |
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| T |
16863753 |
tcaactttctttttaactggataattaggatatgtgcacttgtaataacttcgaagatactcgcttcttt--------------ccatattttctctagt |
16863668 |
T |
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| Q |
120 |
tatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
194 |
Q |
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| T |
16863667 |
tatatccatcatacgaaggtctatcaacattatttgtggatggtaatgctttttggtcctcctcaatgctctgtg |
16863593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 2056406 - 2056300
Alignment:
| Q |
23 |
actttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttat |
122 |
Q |
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| T |
2056406 |
actttctttttaactggacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattat |
2056307 |
T |
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| Q |
123 |
atccatc |
129 |
Q |
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| T |
2056306 |
atccatc |
2056300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 26967036 - 26967130
Alignment:
| Q |
37 |
tggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
131 |
Q |
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| T |
26967036 |
tggacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcat |
26967130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 18876301 - 18876394
Alignment:
| Q |
38 |
ggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
131 |
Q |
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| T |
18876301 |
ggacagttaggatgcgtgcacttgtaataacttcgaggaaactcgctacctttcacctgtttctgtccgtatttcctccagttgtagccatcat |
18876394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 31615337 - 31615430
Alignment:
| Q |
38 |
ggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
131 |
Q |
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| T |
31615337 |
ggacagttagggtatgtgcatttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatcat |
31615430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 3669270 - 3669194
Alignment:
| Q |
53 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatc |
129 |
Q |
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| T |
3669270 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
3669194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 32110260 - 32110321
Alignment:
| Q |
59 |
ttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagtt |
120 |
Q |
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|||||||||||||||||| |||||| ||||| ||||| || |||||||| || |||||||| |
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| T |
32110260 |
ttgtaataacttcgaggaaactcgcaacctttcacttgtttttgtccatacttcctccagtt |
32110321 |
T |
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