View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_133 (Length: 208)
Name: NF1590_high_133
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_133 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 35678548 - 35678724
Alignment:
| Q |
17 |
atacaaagaattaggcttcacattaaaattaaaatggatagatattaccatcatgattgtcaatgttgaaagtcgattttggacaagacttggagaaagt |
116 |
Q |
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| T |
35678548 |
atacaaagaattaggcttcacattaaaattaaaatggatagatattaccatcatgattgtcaatgtggaaagtcgattttggacaagacttggagaaagt |
35678647 |
T |
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| Q |
117 |
gaaagagaaggatggaacttttgaatnnnnnnngtgataaggaattgacaaacaagagtttatatagtgatcaagat |
193 |
Q |
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| T |
35678648 |
gaaagagaaggatggaacttttgaataaaaaaagtgataaggaattgacaagcaagagtctatatagtgatcaagat |
35678724 |
T |
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Target: chr2; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 35684051 - 35684217
Alignment:
| Q |
17 |
atacaaagaattaggcttcacattaaaattaaaatggatagatattaccatcatgattgtcaatgttgaaagtcgattttggacaagacttggagaaagt |
116 |
Q |
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||||||||||||| |||| |||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
35684051 |
atacaaagaattaagcttgacattataattaatatggatagacattaccatcatgactgtcaatgttgaaagtcgattttgaacaagacttgaagaaagt |
35684150 |
T |
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| Q |
117 |
gaaagagaaggatggaacttttgaatnnnnnnngtgataaggaattgacaaa-caagagtttatata |
182 |
Q |
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| T |
35684151 |
gaaagagtgtgatggaaattttgaataaaaaatttgagaaggaattgacaaagcaagagtttatata |
35684217 |
T |
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