View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_high_136 (Length: 201)
Name: NF1590_high_136
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_136 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 10921724 - 10921632
Alignment:
| Q |
91 |
gtgctgtcacaaagaaaaatacaagaaacacgcgatggaagaaccaggcagcaacctatttttctgagagactatgaaagtggagaaggactt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10921724 |
gtgctgtcacaaagaaaaatacaagaaacacgcgatggaagaaccaggcagcaacctatttttctgagagactatgaaagtggagaaggactt |
10921632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 10950697 - 10950643
Alignment:
| Q |
129 |
aagaaccaggcagcaacctatttttctgagagactatgaaagtggagaaggactt |
183 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
10950697 |
aagaaccaggcagcaacctacttttgtgagagactatgaaagtggagaaggactt |
10950643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 10921801 - 10921762
Alignment:
| Q |
14 |
aatatagaagatacacatcaataagatttttaaagatata |
53 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10921801 |
aatatagaagatacgcatcaataagatttttaaagatata |
10921762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University