View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_high_14 (Length: 463)

Name: NF1590_high_14
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_high_14
NF1590_high_14
[»] chr2 (16 HSPs)
chr2 (18-463)||(40879445-40879882)
chr2 (280-461)||(7586400-7586581)
chr2 (280-461)||(8854088-8854269)
chr2 (280-461)||(9073783-9073964)
chr2 (280-461)||(30820480-30820661)
chr2 (280-461)||(12856968-12857149)
chr2 (279-452)||(31186083-31186255)
chr2 (279-459)||(31205799-31205980)
chr2 (279-366)||(4278258-4278343)
chr2 (410-461)||(8853926-8853977)
chr2 (410-461)||(12856888-12856939)
chr2 (352-393)||(6333067-6333108)
chr2 (410-459)||(9073993-9074042)
chr2 (410-463)||(7586569-7586624)
chr2 (410-463)||(9073952-9074007)
chr2 (410-463)||(30820649-30820704)
[»] chr8 (7 HSPs)
chr8 (280-463)||(30530474-30530657)
chr8 (280-463)||(27359162-27359345)
chr8 (280-463)||(27368519-27368702)
chr8 (280-463)||(17743681-17743864)
chr8 (280-461)||(15055638-15055819)
chr8 (280-461)||(1956150-1956331)
chr8 (410-442)||(15055452-15055484)
[»] scaffold1240 (1 HSPs)
scaffold1240 (279-463)||(557-741)
[»] chr1 (25 HSPs)
chr1 (279-463)||(33166294-33166478)
chr1 (279-463)||(47298395-47298579)
chr1 (280-452)||(51522343-51522515)
chr1 (279-455)||(38837535-38837708)
chr1 (279-463)||(17677157-17677342)
chr1 (279-463)||(17785353-17785537)
chr1 (280-461)||(8470339-8470520)
chr1 (280-461)||(48406419-48406600)
chr1 (280-461)||(48386046-48386227)
chr1 (279-450)||(18318635-18318805)
chr1 (280-461)||(2475990-2476171)
chr1 (280-461)||(31470277-31470458)
chr1 (280-461)||(45241129-45241310)
chr1 (410-461)||(8470261-8470312)
chr1 (410-461)||(8470300-8470351)
chr1 (410-461)||(31469996-31470047)
chr1 (410-461)||(31470158-31470209)
chr1 (410-461)||(31470197-31470248)
chr1 (69-116)||(40037027-40037074)
chr1 (424-463)||(51522310-51522349)
chr1 (410-463)||(31470115-31470170)
chr1 (410-463)||(31470234-31470289)
chr1 (410-463)||(45241086-45241141)
chr1 (410-463)||(48386215-48386270)
chr1 (410-463)||(48386256-48386311)
[»] chr4 (22 HSPs)
chr4 (282-460)||(33606095-33606273)
chr4 (305-463)||(34435401-34435559)
chr4 (280-461)||(16172718-16172899)
chr4 (280-461)||(8993777-8993958)
chr4 (280-461)||(13112555-13112736)
chr4 (280-461)||(3616115-3616296)
chr4 (280-461)||(46915340-46915521)
chr4 (299-461)||(3531145-3531307)
chr4 (280-461)||(2213146-2213326)
chr4 (279-428)||(36657582-36657730)
chr4 (280-403)||(28446348-28446471)
chr4 (280-463)||(53182276-53182444)
chr4 (410-461)||(2213437-2213488)
chr4 (410-461)||(46915632-46915683)
chr4 (410-461)||(3531336-3531387)
chr4 (410-461)||(16173055-16173106)
chr4 (410-463)||(33606053-33606106)
chr4 (410-461)||(16173094-16173145)
chr4 (410-463)||(3531295-3531350)
chr4 (410-463)||(3531457-3531512)
chr4 (410-463)||(8993734-8993789)
chr4 (410-463)||(13112512-13112567)
[»] chr3 (38 HSPs)
chr3 (280-463)||(33750670-33750855)
chr3 (279-462)||(50019107-50019290)
chr3 (280-461)||(30416327-30416508)
chr3 (280-461)||(42563001-42563182)
chr3 (279-463)||(26157948-26158132)
chr3 (280-461)||(10425523-10425704)
chr3 (280-461)||(17468505-17468686)
chr3 (280-461)||(25788571-25788752)
chr3 (280-461)||(42599226-42599407)
chr3 (280-461)||(47146362-47146543)
chr3 (280-461)||(25830528-25830709)
chr3 (299-461)||(6046218-6046380)
chr3 (304-447)||(21227202-21227345)
chr3 (359-463)||(33188901-33189005)
chr3 (381-461)||(51429021-51429100)
chr3 (410-461)||(25788781-25788832)
chr3 (410-461)||(25788928-25788979)
chr3 (410-461)||(25830738-25830789)
chr3 (410-461)||(25830885-25830936)
chr3 (410-461)||(47146036-47146087)
chr3 (410-461)||(47146202-47146253)
chr3 (401-461)||(42599585-42599645)
chr3 (410-461)||(42562769-42562820)
chr3 (410-461)||(42599436-42599487)
chr3 (410-461)||(42599475-42599526)
chr3 (410-461)||(47146323-47146374)
chr3 (280-460)||(21230393-21230574)
chr3 (410-461)||(6046450-6046501)
chr3 (410-461)||(6046612-6046663)
chr3 (410-461)||(6046733-6046784)
chr3 (412-463)||(42562806-42562857)
chr3 (410-461)||(42599555-42599606)
chr3 (90-207)||(32240660-32240779)
chr3 (352-393)||(53722743-53722784)
chr3 (410-463)||(17468462-17468517)
chr3 (410-463)||(30416496-30416551)
chr3 (410-463)||(42599395-42599450)
chr3 (410-463)||(42599514-42599569)
[»] chr7 (15 HSPs)
chr7 (280-461)||(22658938-22659119)
chr7 (279-463)||(32128091-32128275)
chr7 (279-460)||(26814175-26814356)
chr7 (280-461)||(36520521-36520702)
chr7 (280-461)||(22193305-22193486)
chr7 (410-461)||(22193078-22193129)
chr7 (410-461)||(22193225-22193276)
chr7 (410-463)||(26814133-26814186)
chr7 (410-463)||(32128300-32128353)
chr7 (410-454)||(22658622-22658666)
chr7 (410-461)||(22658573-22658624)
chr7 (410-461)||(22658654-22658705)
chr7 (410-461)||(22658693-22658744)
chr7 (410-462)||(22658731-22658783)
chr7 (401-461)||(32128252-32128312)
[»] chr6 (20 HSPs)
chr6 (280-460)||(18641297-18641477)
chr6 (280-429)||(8221233-8221382)
chr6 (280-461)||(34840500-34840681)
chr6 (279-461)||(24917448-24917630)
chr6 (280-461)||(17959161-17959342)
chr6 (280-461)||(633759-633940)
chr6 (280-461)||(6378293-6378474)
chr6 (286-382)||(24114211-24114307)
chr6 (401-461)||(8220864-8220924)
chr6 (410-461)||(8220903-8220954)
chr6 (410-463)||(24917618-24917671)
chr6 (410-461)||(633385-633436)
chr6 (410-461)||(633532-633583)
chr6 (410-461)||(633679-633730)
chr6 (410-461)||(6378503-6378554)
chr6 (410-461)||(6378650-6378701)
chr6 (410-461)||(8220942-8220993)
chr6 (410-461)||(8221148-8221199)
chr6 (401-460)||(24114148-24114207)
chr6 (410-463)||(17959330-17959385)
[»] chr5 (14 HSPs)
chr5 (280-461)||(29617392-29617573)
chr5 (280-461)||(30646727-30646908)
chr5 (280-461)||(4579098-4579279)
chr5 (280-461)||(32974221-32974402)
chr5 (280-461)||(40890816-40890997)
chr5 (280-461)||(27944645-27944826)
chr5 (410-461)||(27406303-27406354)
chr5 (412-461)||(4578977-4579026)
chr5 (352-393)||(34918157-34918198)
chr5 (410-461)||(27944483-27944534)
chr5 (421-461)||(27406275-27406315)
chr5 (410-457)||(29617728-29617775)
chr5 (410-463)||(4578934-4578989)
chr5 (410-463)||(4579055-4579110)
[»] scaffold0004 (3 HSPs)
scaffold0004 (279-457)||(104888-105066)
scaffold0004 (410-463)||(104804-104857)
scaffold0004 (401-461)||(104845-104905)
[»] scaffold0658 (1 HSPs)
scaffold0658 (351-463)||(7019-7130)
[»] scaffold0007 (1 HSPs)
scaffold0007 (304-460)||(167228-167384)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 40879445 - 40879882
Alignment:
Q  18 tttggtatgctacagcaggatgaactgcagttactctattagttatggagatatttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaag 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  40879445 tttggtaggctacagcaggatgaactgcagttactctattagttatgg-----tttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaag 40879539  T
Q  118 gtagataaataaacaggtcgaaaagtatattatactcaattaaaaagttgtgcttttaacatgtcaatatatgtggagcagcctggtcttggnnnnnnnn 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  40879540 gtagataaataaacaggtcgaaaagtatattatactcaactaaaaagttgtgcttttaacatgtcaatatatgtggagcagcctggtcttggaaaaaaa- 40879638  T
Q  218 ttcatattacaacagcaaaggactagacaacatattgaagaaagagatttgtttcttcaatctgtatgtaaagttaagtttcgaaaagcatctcgatgat 317  Q
    ||||||||||||||||||||||| ||||||||  ||||||||| | |||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  40879639 ttcatattacaacagcaaaggacaagacaacagtttgaagaaacatatttgtttcttcaatctgtatgtaaagttaagttccaaagagcatctcgatgat 40879738  T
Q  318 cggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtct 417  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||  ||||||||    
T  40879739 cggaaaaaggagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttg--ttcggtcaaaattgtcagtgttgtct 40879836  T
Q  418 agtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  40879837 agtccccagtgtttgctttaataattgtcagtgttgtctagtcctc 40879882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 7586400 - 7586581
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  7586400 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 7586499  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  7586500 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 7586581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 8854269 - 8854088
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  8854269 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8854170  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | ||||||||||||  |||||||||||||||||||||    
T  8854169 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatcattgtcagtgttgtctagtcc 8854088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 9073783 - 9073964
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  9073783 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 9073882  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  9073883 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 9073964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 30820480 - 30820661
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  30820480 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30820579  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  30820580 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 30820661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 12857149 - 12856968
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  12857149 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 12857050  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  12857049 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 12856968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 279 - 452
Target Start/End: Original strand, 31186083 - 31186255
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    |||||||||| |||||||| || | | ||||||||||| |||||||||||| |||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  31186083 ctgtatgtaatgttaagttccggagaacatctcgatgaccggaaaaaagagatgttggaaaacttggaacgtgagctgtttgaaaattaatttcaatcaa 31186182  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgtt 452  Q
    |||||||||||||||| || | |||||||  ||||||||||| |||||||||| |||||| |||||||||||||    
T  31186183 atatttgtttgtattcggtaataattgtcagtgttgtctagt-cccagtgttttctttaataattgtcagtgtt 31186255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 279 - 459
Target Start/End: Original strand, 31205799 - 31205980
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    |||||||||| ||||||||  ||| |  |||||||||| |||||||||||| |||||| ||| |||||  |||||||||||  |||||||||||||||||    
T  31205799 ctgtatgtaatgttaagttctgaagaatatctcgatgaccggaaaaaagagatgttggaaaacttggaatgtgagctgtttgaaaattaatttcaatcaa 31205898  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatg-ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagt 459  Q
    |||||||||||||||| || | |||||||  || ||||||||||||||||||||||||||| |||||| |||||||||||||    
T  31205899 atatttgtttgtattcggtaataattgtcagtgtttgtctagtccccagtgtttgctttaataattgttagtgttgtctagt 31205980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 4278343 - 4278258
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaatt 366  Q
    |||||||||||||||||||||||| ||||||||||||| ||  ||||| || |||||| | |||||||||||||||||||| ||||||    
T  4278343 ctgtatgtaaagttaagtttcgaagagcatctcgatgaccg--aaaaatagctgttggaagagttggagcgtgagctgtttggaaatt 4278258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 8853977 - 8853926
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  8853977 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 8853926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 12856939 - 12856888
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  12856939 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 12856888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 6333067 - 6333108
Alignment:
Q  352 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 393  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  6333067 agctgtttggaaattaatttcaatcaaatatttgtctgtatt 6333108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 9073993 - 9074042
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagt 459  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||    
T  9073993 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagt 9074042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 7586569 - 7586624
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  7586569 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 7586624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 9073952 - 9074007
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  9073952 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 9074007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 30820649 - 30820704
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  30820649 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 30820704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 280 - 463
Target Start/End: Original strand, 30530474 - 30530657
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    |||||||||||||||||| | || ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30530474 tgtatgtaaagttaagttccaaagagcatctcgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 30530573  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||||||||||| ||||||||||||  |||||||||||||| || |||| |||||| ||||||||||||||||||||||||    
T  30530574 tatttgtttgtattcggtcaaaattgtcagtgttgtctagtcccgagcgtttactttaataattgtcagtgttgtctagtcctc 30530657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 27359345 - 27359162
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||  || || ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27359345 tgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaattaatttcaatcaaa 27359246  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  27359245 tatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctagtcctc 27359162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 27368702 - 27368519
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||  || || ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27368702 tgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaattaatttcaatcaaa 27368603  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  27368602 tatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctagtcctc 27368519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 17743864 - 17743681
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||||||  ||||| ||| ||||||||||||||||||  |||||||||||||||||     
T  17743864 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagacgttggaaaacttggagcgtgagctgtttgcaaattaatttcaatcaac 17743765  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||||||||||| || | |||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  17743764 tatttgtttgtattcggtaataattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatgttgtctagtcctc 17743681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 15055819 - 15055638
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  15055819 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 15055720  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  15055719 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 15055638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 1956150 - 1956331
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  1956150 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 1956249  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  1956250 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 1956331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 442
Target Start/End: Complemental strand, 15055484 - 15055452
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaat 442  Q
    |||||||||||||||| ||||||||||||||||    
T  15055484 tgttgtctagtccccactgtttgctttaacaat 15055452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 279 - 463
Target Start/End: Original strand, 557 - 741
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  557 ctgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaagagctgttggaaaacttggagcgtgagctgtttggaaattaatttcaatcaa 656  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||| |||||||||||| ||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  657 ataattgtttgtattcggtcaaaattgtcagtgttgtatagtccccagtgtttgctttaataattgtcagtgttgtctagtcctc 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 279 - 463
Target Start/End: Complemental strand, 33166478 - 33166294
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| || |||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  33166478 ctgtatgtaaagttaagttccgaagagaatcttgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaa 33166379  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||||||| ||||||||||||  |||||||||||| ||| | ||| |||||| ||||||||||||||||||||||||    
T  33166378 atatttgtttgtattcggtcaaaattgtcagtgttgtctagtctccaatttttactttaataattgtcagtgttgtctagtcctc 33166294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 279 - 463
Target Start/End: Original strand, 47298395 - 47298579
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| || |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  47298395 ctgtatgtaaagttaagttccgaagagtatctcgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaattgcaatcca 47298494  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||||||| ||||||||||||  |||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  47298495 atatttgtttgtattcggtcaaaattgtcagtgttgtttagaccccaatgtttgctttaataattgtcagtgttgtctagtcctc 47298579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 280 - 452
Target Start/End: Complemental strand, 51522515 - 51522343
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    |||||||||||||||||| |||| ||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  51522515 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaagaaagtgctgttggaaaagttggagcgtgagctgttttgaaattaatttcactcaaa 51522416  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgtt 452  Q
    ||||||||||||||| ||||||||||||  ||||||||||||  ||||||||||||||| |||||||||||||    
T  51522415 tatttgtttgtattcggtcaaaattgtcagtgttgtctagtctacagtgtttgctttaataattgtcagtgtt 51522343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 279 - 455
Target Start/End: Original strand, 38837535 - 38837708
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||   |||| ||||| |    
T  38837535 ctgtatgtaaagttaaattccgaagagcatctcgatgaccggaaaaaagagttgttggaaaagttggagcgtgagctgttttgaa---aattgcaatcca 38837631  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtc 455  Q
    |||||||||||||||| ||||||||||||| ||||||| || || ||||||||||||||| ||||||||||||||||    
T  38837632 atatttgtttgtattcggtcaaaattgtcggtgttgtcaagacctcagtgtttgctttaataattgtcagtgttgtc 38837708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 279 - 463
Target Start/End: Original strand, 17677157 - 17677342
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcgg-aaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatca 377  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||     
T  17677157 ctgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaaagagctgttggaaaagttggagcgtgagctattttgaaattaattgcaatcc 17677256  T
Q  378 aatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||||||||||||| ||||||||||||  |||||||||| ||  |||||||| ||||| |||||||| |||||||||||||||    
T  17677257 aatatttgtttgtattcggtcaaaattgtcagtgttgtctagaccttagtgtttgttttaataattgtcaatgttgtctagtcctc 17677342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 279 - 463
Target Start/End: Complemental strand, 17785537 - 17785353
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| |||||||||||||   |||||||||| |  ||| ||| |||||||||||||||||||||||||||||||||||||    
T  17785537 ctgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagctactggaaaacttggagcgtgagctgttttgaaattaatttcaatcaa 17785438  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||| |||||||||||| ||||||||||||  |||||||||||| | |||||||||||||| |||| | |||||||||||||||||    
T  17785437 ataattgtttgtattcggtcaaaattgtcagtgttgtctagtctctagtgtttgctttaataattattagtgttgtctagtcctc 17785353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 8470520 - 8470339
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||| |||||  ||||| |||||||||||||||||| ||||||||||  || ||||||| ||| |||    
T  8470520 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagtaagagctgttgggaaagttggagcttgagctgtttaaaagttaattttaattaaa 8470421  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  8470420 tatttgtttgtattcagtcaaaattatcagtgttgtctagtccccaatgtttgctttaataattatcagtgttgtctagtcc 8470339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 48406600 - 48406419
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||| || || |||||||||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  48406600 tgtatctaaagttaagttccgaagagcatctcgatgaccgaaagaaagagttgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 48406501  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||||||| | |||||||| || ||||||||    
T  48406500 tatttgtttatattcagtcaaaattatcagtgttgtctagtcccgagtgtttgctttaatatttgtcagtattatctagtcc 48406419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 48386046 - 48386227
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  48386046 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 48386145  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  48386146 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 48386227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 279 - 450
Target Start/End: Original strand, 18318635 - 18318805
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    |||||| |||||||| ||| |||| ||||||||||||| ||||| |||||| | |||| |||||||||||||||||| |||  |||||||||||||||||    
T  18318635 ctgtatctaaagtta-gttccgaagagcatctcgatgaccggaagaaagagctattggaaaagttggagcgtgagctatttgaaaattaatttcaatcaa 18318733  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtg 450  Q
    |||||||||||||||| || |||||||||  |||||||||||||||| |||||||||||| |||||||||||    
T  18318734 atatttgtttgtattcggttaaaattgtcagtgttgtctagtccccactgtttgctttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 2475990 - 2476171
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |||||  |||||||||| |||||||    
T  2475990 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaattttaatcaaa 2476089  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  2476090 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtctagtcc 2476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 31470458 - 31470277
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  31470458 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 31470359  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  31470358 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 31470277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 45241310 - 45241129
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  45241310 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 45241211  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  45241210 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 45241129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 8470312 - 8470261
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  8470312 tgttgtttagtccccagtgtttgctttaataattgtcagtgttgtctagtcc 8470261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 8470351 - 8470300
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  8470351 tgttgtctagtccccagtgtttgctttaataattatcagtgttgtttagtcc 8470300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 31470047 - 31469996
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  31470047 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 31469996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 31470209 - 31470158
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  31470209 tgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 31470158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 31470248 - 31470197
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  31470248 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 31470197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 40037074 - 40037027
Alignment:
Q  69 tatttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaa 116  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  40037074 tattttagagaaagattttgctgaacaaacagaagaagaaaaatcaaa 40037027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 463
Target Start/End: Complemental strand, 51522349 - 51522310
Alignment:
Q  424 cagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  51522349 cagtgtttgctttaataattgtcagtgttgtctcgtcctc 51522310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 31470170 - 31470115
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  31470170 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 31470115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 31470289 - 31470234
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  31470289 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 31470234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 45241141 - 45241086
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  45241141 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 45241086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 48386215 - 48386270
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  48386215 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 48386270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 48386256 - 48386311
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    ||||||||||||| || |||||||||||| |||| ||  |||||||||||||||||    
T  48386256 tgttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctc 48386311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 282 - 460
Target Start/End: Complemental strand, 33606273 - 33606095
Alignment:
Q  282 tatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaata 381  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  33606273 tatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagttgttggaagagttggagcgtgagctgttttgaaattaatttcaatcaaata 33606174  T
Q  382 tttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 460  Q
    |||||| |||||| ||||||||||||  ||||||||||| |||| ||||| |||||| |||||| ||||||||||||||    
T  33606173 tttgttggtattcggtcaaaattgtcagtgttgtctagttcccaatgtttactttaataattgttagtgttgtctagtc 33606095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 305 - 463
Target Start/End: Original strand, 34435401 - 34435559
Alignment:
Q  305 gcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaatt 404  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  34435401 gcatctcgacgaccggaaaaaagagttgttggaaaagttggagcgtgagctattttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaatt 34435500  T
Q  405 gtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||    
T  34435501 gtcaatgttgtctagtccctagtgtttgctttaataattgttagtgttgtctagtcctc 34435559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 16172718 - 16172899
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  16172718 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttggaaattaattttaatcaaa 16172817  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||||||| ||  |||| ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  16172818 tatttgtttgtattcagtcaaaattatcagtgttatctagtcccgagtgtttgctttaatatttgtcagtgttgcctagtcc 16172899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 8993958 - 8993777
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  8993958 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8993859  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  8993858 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 8993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 13112736 - 13112555
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  13112736 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 13112637  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  13112636 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 13112555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 3616115 - 3616296
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |||||  |||||||||| |||||||    
T  3616115 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaattttaatcaaa 3616214  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  3616215 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtctagtcc 3616296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 46915340 - 46915521
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||| ||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  46915340 tgtatctaaagttaagggacgaagagcatgtcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 46915439  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  46915440 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 46915521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 299 - 461
Target Start/End: Original strand, 3531145 - 3531307
Alignment:
Q  299 cgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtc 398  Q
    |||| ||||||||||||| ||||| || ||| ||||||| |||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  3531145 cgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcatgagctgtttgaaaattaattttaatcaaatatttgtttgtattcagtc 3531244  T
Q  399 aaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    || ||| ||  |||||||||||| | | |||||||||||| | ||||||||||||||||||||    
T  3531245 aacattatcagtgttgtctagtctcgactgtttgctttaatatttgtcagtgttgtctagtcc 3531307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 2213146 - 2213326
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  2213146 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 2213245  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | |||||| |||||||||||||    
T  2213246 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtca-tgttgtctagtcc 2213326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 279 - 428
Target Start/End: Complemental strand, 36657730 - 36657582
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| |||||||| |||| || |||||| || |||| | ||| ||||||||||||||||||  |||||||||||||||||    
T  36657730 ctgtatgtaaagttaagttccgaagagcatctcaatgaccg-aaaaaatagctgttagaaaacttggagcgtgagctgtttgaaaattaatttcaatcaa 36657632  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtg 428  Q
    |||||||||||||||  ||||||||||||  ||||||||||||| |||||    
T  36657631 atatttgtttgtatttggtcaaaattgtcagtgttgtctagtcctcagtg 36657582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 280 - 403
Target Start/End: Complemental strand, 28446471 - 28446348
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    |||||||||||||||||  |||| |||||||| |||| ||||| |||||| |||||| |||||||| |  |||| |||||||||||||||||||||||||    
T  28446471 tgtatgtaaagttaagtcccgaagagcatctcaatgaccggaagaaagagatgttggaaaagttggtgtttgagttgttttgaaattaatttcaatcaaa 28446372  T
Q  380 tatttgtttgtattcagtcaaaat 403  Q
    ||||||||||||||||||||||||    
T  28446371 tatttgtttgtattcagtcaaaat 28446348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 463
Target Start/End: Original strand, 53182276 - 53182444
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||||  ||| ||||||| ||||| |||||||||||| |||||| ||| |||| |||||||||||||||||||                  
T  53182276 tgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat-------------- 53182361  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
     |||||||||||||| ||||||||||||  ||||||||||  |||| ||||| |||||| |||||||||| |||||||||||||    
T  53182362 -atttgtttgtattcggtcaaaattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagtattgtctagtcctc 53182444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 2213437 - 2213488
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  2213437 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 2213488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 46915632 - 46915683
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  46915632 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 46915683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 3531336 - 3531387
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||||||||    
T  3531336 tgttgtctagtcctcactgtttgctttaatatttgtcagtgttgtctagtcc 3531387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 16173055 - 16173106
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||||||    
T  16173055 tgttgtctagtcccgactgtttgctttaataattatcagtgttgtctagtcc 16173106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 33606106 - 33606053
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||| ||| ||||| |||||| ||||| ||||||||||||||||||    
T  33606106 tgttgtctagtctccaatgtttactttaataattgacagtgttgtctagtcctc 33606053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 16173094 - 16173145
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| | |||||||||||| || | |||||||||||||||||    
T  16173094 tgttgtctagtcccgactgtttgctttaataaatatcagtgttgtctagtcc 16173145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 3531295 - 3531350
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  3531295 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 3531350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 3531457 - 3531512
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    ||||||||||||| || |||||||||||| |||| ||  |||||||||||||||||    
T  3531457 tgttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctc 3531512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 8993789 - 8993734
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  8993789 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 8993734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 13112567 - 13112512
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  13112567 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 13112512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 33750855 - 33750670
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||| |||||||||||||| ||| |||||||||||||||||||    
T  33750855 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagaggtgttggaaaacttggagcgtgagctttttggaaattaatttcaatcaaa 33750756  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattg--tcagtgttgtctagtcctc 463  Q
    || |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||    
T  33750755 taattgtttgtattcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtttcagtgttgtctaatcctc 33750670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 279 - 462
Target Start/End: Complemental strand, 50019290 - 50019107
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| |||||||||||||   ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  50019290 ctgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagttgttggaaaacttggagcgtgagctgtttggaaattaatttcaatcaa 50019191  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcct 462  Q
    ||||||||||||||||  ||||||||||   ||||||||||||||||||||||||||||| |||||| ||| |||| |||||||    
T  50019190 atatttgtttgtattcgatcaaaattgttagtgttgtctagtccccagtgtttgctttaataattgttagttttgtatagtcct 50019107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 30416327 - 30416508
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  30416327 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30416426  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  30416427 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 30416508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 42563182 - 42563001
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  42563182 tgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 42563083  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| |   ||||||||||||||   |||||||||||| | ||||||||||||||| ||||    
T  42563082 tatttgtttgtattcagtcaacattattagtgttgtctagtcccgtctgtttgctttaatatttgtcagtgttgtctggtcc 42563001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 279 - 463
Target Start/End: Original strand, 26157948 - 26158132
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    |||||||||||||||||||  ||| ||||||| ||||| || ||||||| ||||||||   ||||||  |||||| ||||||||||||||||||| ||||    
T  26157948 ctgtatgtaaagttaagttctgaagagcatcttgatgaccgaaaaaaagcgttgttggaggagttggtacgtgagttgttttgaaattaatttcagtcaa 26158047  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    ||||||| |||||||| ||||||||||||  |||||||||||||||| ||||| |||||| || |||||||||||||||||||||    
T  26158048 atatttggttgtattcggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagtgttgtctagtcctc 26158132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 10425523 - 10425704
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| | ||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  10425523 tgtatctaaagttaagggacgaagagcatctcgatgaccagaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 10425622  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  10425623 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 10425704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 17468686 - 17468505
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  17468686 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 17468587  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  17468586 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 17468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 25788571 - 25788752
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  25788571 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 25788670  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  25788671 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 25788752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 42599226 - 42599407
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  42599226 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 42599325  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599326 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 47146543 - 47146362
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  47146543 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 47146444  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  47146443 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 47146362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 25830528 - 25830709
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  25830528 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 25830627  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  25830628 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 25830709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 299 - 461
Target Start/End: Original strand, 6046218 - 6046380
Alignment:
Q  299 cgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtc 398  Q
    |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||||||||||||||||| |||    
T  6046218 cgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaatatttgtttgtattccgtc 6046317  T
Q  399 aaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    || ||| ||  |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046318 aacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 304 - 447
Target Start/End: Complemental strand, 21227345 - 21227202
Alignment:
Q  304 agcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 403  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |  || |||||| |||||||||||||||||| ||||||||||||||| |||||| |    
T  21227345 agcatctcgatgaccggaagaaagagatgttgggaaagttgggccaagaactgtttggaaattaatttcaatcaattatttgtttgtattcggtcaaact 21227246  T
Q  404 tgtcgatgttgtctagtccccagtgtttgctttaacaattgtca 447  Q
    || |  ||||||| ||||||| ||||||||||||| ||||||||    
T  21227245 tggcagtgttgtcaagtccccggtgtttgctttaataattgtca 21227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 359 - 463
Target Start/End: Original strand, 33188901 - 33189005
Alignment:
Q  359 ttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctag 458  Q
    |||||||||||| ||||| | ||||||||||||||| |||||||||||   |||||||||| || ||||||||| ||||| |||||||||||||||||||    
T  33188901 ttgaaattaattgcaatccagtatttgtttgtattcggtcaaaattgttagtgttgtctagacctcagtgtttgttttaataattgtcagtgttgtctag 33189000  T
Q  459 tcctc 463  Q
    |||||    
T  33189001 tcctc 33189005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 461
Target Start/End: Complemental strand, 51429100 - 51429021
Alignment:
Q  381 atttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| |||||||||||| |||||||||||| |||| ||||| |||||| ||||||||||||||||||||||    
T  51429100 atttgtttgtattcggtcaaaattgtc-atgttgtctagttcccaatgtttactttaataattgtcagtgttgtctagtcc 51429021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 25788781 - 25788832
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25788781 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25788832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 25788928 - 25788979
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25788928 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 25830738 - 25830789
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25830738 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25830789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 25830885 - 25830936
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25830885 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25830936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 47146087 - 47146036
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  47146087 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 47146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 47146253 - 47146202
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  47146253 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 47146202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 42599585 - 42599645
Alignment:
Q  401 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||| ||| |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599585 aattatcggtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 42562820 - 42562769
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  42562820 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 42562769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 42599436 - 42599487
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  42599436 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 42599487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 42599475 - 42599526
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599475 tgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 47146374 - 47146323
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  47146374 tgttgtctagtccgtagtgtttgctttaatatttgtcagtgttgtctagtcc 47146323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 460
Target Start/End: Original strand, 21230393 - 21230574
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||| |||||| | || ||||||||||||| | ||| |||||  |||||| ||||||||  |  || || ||| ||||||||||| ||||||     
T  21230393 tgtatataaagataagttccaaagagcatctcgatgaccagaagaaagatatgttggaaaagttgggccaagaactatttggaaattaattttaatcaat 21230492  T
Q  380 tatttgtttgtattcagtcaaaa-ttgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 460  Q
    ||||||  ||  ||| | | ||| ||| |  || |||| ||||||||||||||||||||| ||||||||||| |||| ||||    
T  21230493 tatttgactgagttccgaccaaacttggcagtgctgtcaagtccccagtgtttgctttaataattgtcagtgatgtcaagtc 21230574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 6046450 - 6046501
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046450 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 6046612 - 6046663
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046612 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 6046733 - 6046784
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046733 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 42562857 - 42562806
Alignment:
Q  412 ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||| || || |||||||||||| |||| |||||||||||||||||||    
T  42562857 ttgtctagccctcattgtttgctttaataattatcagtgttgtctagtcctc 42562806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 42599555 - 42599606
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||| || |||||||||||| |||| || ||||||||||||||    
T  42599555 tgttgtctagtcctcactgtttgctttaataattatcggtgttgtctagtcc 42599606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 32240660 - 32240779
Alignment:
Q  90 tgaaccaacagaagaagaaaaatcaaaggtagataaat--aaacaggtcg-aaaagtatattatactcaattaaaaagttgtgcttttaacatgtcaata 186  Q
    |||||||| ||||||||||||||||||||| ||| |||  |||||||| | ||||  ||||| ||  |||||||||| ||  |||||||| |||||| ||    
T  32240660 tgaaccaatagaagaagaaaaatcaaaggttgatcaataaaaacaggtagaaaaaagatattttatgcaattaaaaactt-cgcttttaatatgtcagta 32240758  T
Q  187 tatgtggagcagcctggtctt 207  Q
    |||| ||||| ||||| ||||    
T  32240759 tatgaggagctgcctgatctt 32240779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 53722784 - 53722743
Alignment:
Q  352 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 393  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  53722784 agctgtttgaaaattaatttcaatcaaatatttgtctgtatt 53722743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 17468517 - 17468462
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  17468517 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 17468462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 30416496 - 30416551
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  30416496 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 30416551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 42599395 - 42599450
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  42599395 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 42599450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 42599514 - 42599569
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  42599514 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 42599569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 22659119 - 22658938
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| |||||| |||||||   |||||||||||||||||||  |||||||||| |||||||    
T  22659119 tgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaagagctgttggggctgttggagcgtgagctgtttgaaaattaattttaatcaaa 22659020  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||||||| ||  |||||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  22659019 tatttgtttgtattcagtcaaaattatcagtgttgtctagtctcgagtgtttgctttaatatttgtcagtgttgtctagtcc 22658938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 279 - 463
Target Start/End: Original strand, 32128091 - 32128275
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| ||||||||   |||||||||||||||||||||||||||||||||| ||||    
T  32128091 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgttgttggaggagttggagcgtgagctgttttgaaattaatttcagtcaa 32128190  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||||||| |||||||||| |  |||||||||||  ||| |||||  ||||| ||||||||||||||||||||||||    
T  32128191 atatttgtttgtattcggtcaaaattgccagtgttgtctagtttccaatgtttattttaataattgtcagtgttgtctagtcctc 32128275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 279 - 460
Target Start/End: Complemental strand, 26814356 - 26814175
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| | ||||||   |||||||||||||||||||||||||||||||||| ||||    
T  26814356 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgctgttggaggagttggagcgtgagctgttttgaaattaatttcagtcaa 26814257  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 460  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||| ||||| |||||| || ||| ||||||||||||||    
T  26814256 atatttgtttgtatttggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgttagtgttgtctagtc 26814175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 36520702 - 36520521
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  36520702 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 36520603  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  36520602 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 36520521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 22193486 - 22193305
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  22193486 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 22193387  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  22193386 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 22193305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 22193129 - 22193078
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  22193129 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 22193078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 22193276 - 22193225
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  22193276 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 22193225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 26814186 - 26814133
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||| ||| ||||| |||||| || |||||||||||||||||||||    
T  26814186 tgttgtctagtctccaatgtttactttaataaatgtcagtgttgtctagtcctc 26814133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 32128300 - 32128353
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||||| | ||||| |||||| || |||||||||||||||||||||    
T  32128300 tgttgtctagtccctaatgtttactttaataaatgtcagtgttgtctagtcctc 32128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 22658666 - 22658622
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgt 454  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||    
T  22658666 tgttgtctagtccccactgtttgctttaataattatcagtgttgt 22658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 22658624 - 22658573
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||| |  |||||||||||| |||| |||||||||||||||||    
T  22658624 tgttgtctagtcctccctgtttgctttaataattatcagtgttgtctagtcc 22658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 22658705 - 22658654
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||    
T  22658705 tgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtcc 22658654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 22658744 - 22658693
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||  | |||||||||||| |||| |||||||||||||||||    
T  22658744 tgttgtctagtcctgactgtttgctttaataattatcagtgttgtctagtcc 22658693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 22658783 - 22658731
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcct 462  Q
    ||||||||| || | | |||||||||||| |||| ||||||||||||||||||    
T  22658783 tgttgtctactcacgactgtttgctttaataattatcagtgttgtctagtcct 22658731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 32128252 - 32128312
Alignment:
Q  401 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||  ||||||||||||| || ||||| |||||| || ||| |||||||||||||||    
T  32128252 aattgtcagtgttgtctagtcctcaatgtttactttaataagtgttagtgttgtctagtcc 32128312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 280 - 460
Target Start/End: Complemental strand, 18641477 - 18641297
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  18641477 tgtatataaagttaagttccgaagagcatctcgatgaccgaaaaaaagagttgttggagaagttggagcgtgagctgttttgaaattaatttcaatcaaa 18641378  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 460  Q
    |||||||||||||||  |||||||||||  |||||||||||  ||| |||||  ||||| |||||||| |||||| |||||    
T  18641377 tatttgtttgtattcgttcaaaattgtcagtgttgtctagtttccaatgtttagtttaataattgtcaatgttgtttagtc 18641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 429
Target Start/End: Complemental strand, 8221382 - 8221233
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||  |||||||||| |||||||    
T  8221382 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8221283  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgt 429  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| |||||    
T  8221282 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcccaagtgt 8221233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 34840681 - 34840500
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  34840681 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 34840582  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  34840581 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 34840500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 279 - 461
Target Start/End: Original strand, 24917448 - 24917630
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||||| ||||||   |||||||| || |||||||||||||||||||||| ||||    
T  24917448 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagagctgttggaggagttggagagtaagctgttttgaaattaatttcagtcaa 24917547  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||| ||  ||||||||||||  |||||||||||  ||| ||||| |||||| ||||| ||||||||||||||||    
T  24917548 atatttgtttgtgtttggtcaaaattgtcagtgttgtctagtatccaatgtttactttaataattgccagtgttgtctagtcc 24917630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 17959161 - 17959342
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  17959161 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 17959260  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  17959261 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 17959342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 633940 - 633759
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  633940 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 633841  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  633840 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 6378293 - 6378474
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  6378293 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 6378392  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  6378393 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 6378474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 286 - 382
Target Start/End: Complemental strand, 24114307 - 24114211
Alignment:
Q  286 taaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatat 382  Q
    |||||||||||| |||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  24114307 taaagttaagttccgaagagcatctcgatgaccggaagaaagagttgttggaaaagttggagcgtgagctgtttgaaaattaatttcaatcaaatat 24114211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 8220924 - 8220864
Alignment:
Q  401 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8220924 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtctagtcc 8220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 8220954 - 8220903
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  8220954 tgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtctagtcc 8220903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 24917618 - 24917671
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  24917618 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcctc 24917671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 633436 - 633385
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633436 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 633583 - 633532
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633583 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 633730 - 633679
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633730 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 6378503 - 6378554
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  6378503 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 6378554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 6378650 - 6378701
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  6378650 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 6378701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 8220993 - 8220942
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  8220993 tgttctctagtccccagtgtttgctttaataattatcagtgttgtctagtcc 8220942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 8221199 - 8221148
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  8221199 tgttgtctaatccccagtgtttgctttaataattgtcagtgttgtttagtcc 8221148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 24114207 - 24114148
Alignment:
Q  401 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 460  Q
    |||||||  ||||||||||||||||  ||||||||||| ||||||||||| |||| ||||    
T  24114207 aattgtcagtgttgtctagtccccacagtttgctttaataattgtcagtggtgtcaagtc 24114148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 17959330 - 17959385
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  17959330 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 17959385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 29617392 - 29617573
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||||  ||| ||||||||||||| || || |||||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  29617392 tgtatctaaagttaagttctgaagagcatctcgatgaccgaaagaaagagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 29617491  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| |||||||||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  29617492 tatttgtttgtatttagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 29617573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 30646727 - 30646908
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||||  ||| ||||||||||||| || |  |||||| |||||| ||||||||||||||||||||||  |||||||||| |||||||    
T  30646727 tgtatctaaagttaagttatgaagagcatctcgatgaccgaatgaaagagctgttggaaaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30646826  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||||||| ||  |||||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  30646827 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcacgagtgtttgctttaatatttgtcagtgttgtctagtcc 30646908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 4579279 - 4579098
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  4579279 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 4579180  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  4579179 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 4579098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 32974221 - 32974402
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  32974221 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 32974320  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | | |||||||||| | ||||||||||||||||||||    
T  32974321 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtcc 32974402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 40890997 - 40890816
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  40890997 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 40890898  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  40890897 tatttgtttgtattcagtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 40890816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 280 - 461
Target Start/End: Complemental strand, 27944826 - 27944645
Alignment:
Q  280 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 379  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  27944826 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 27944727  T
Q  380 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||||||||| ||| ||  || |||||||| || | |||||||||||| | ||||||||||||||||||||    
T  27944726 tatttgtttgtattcagtcaacattatcagtgctgtctagttccgactgtttgctttaatatttgtcagtgttgtctagtcc 27944645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 27406303 - 27406354
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  27406303 tgttgtctagtccctggtgtttgctttaataattgtcagtgttgtctagtcc 27406354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 4579026 - 4578977
Alignment:
Q  412 ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  4579026 ttgtctagtccccaatgtttgctttaatatttgtcagtgttgtctagtcc 4578977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 34918157 - 34918198
Alignment:
Q  352 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 393  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  34918157 agctgtttggaaattaatttcaatcaaatatttgtttgtatt 34918198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 27944534 - 27944483
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||||||||    
T  27944534 tgttgtctagtcctcactgtttgctttaatatttgtcagtgttgtctagtcc 27944483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 27406275 - 27406315
Alignment:
Q  421 ccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  27406275 ccccagtgtttgctttaataattatcagtgttgtctagtcc 27406315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 29617728 - 29617775
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtcta 457  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||    
T  29617728 tgttgtctagtcccgactgtttgctttaataattatcagtgttgtcta 29617775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 4578989 - 4578934
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  4578989 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 4578934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 4579110 - 4579055
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 463  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  4579110 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 4579055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 279 - 457
Target Start/End: Complemental strand, 105066 - 104888
Alignment:
Q  279 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 378  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| |  |||||   |||||||| ||||||||||||||||||||||||| ||||    
T  105066 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgcggttggaggagttggagtgtgagctgttttgaaattaatttcagtcaa 104967  T
Q  379 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtcta 457  Q
    |||||||||||||||| ||||||||||||  ||||||||||| |||| |||||  ||||| ||||||||||||||||||    
T  104966 atatttgtttgtattcggtcaaaattgtcagtgttgtctagttcccaatgtttattttaataattgtcagtgttgtcta 104888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 104857 - 104804
Alignment:
Q  410 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctc 463  Q
    |||||||||||||||| ||||| |||||| || |||||||||||||||||||||    
T  104857 tgttgtctagtccccaatgtttactttaataaatgtcagtgttgtctagtcctc 104804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 104905 - 104845
Alignment:
Q  401 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 461  Q
    |||||||  ||||||||| |||||| ||||| |||||| || ||| |||||||||||||||    
T  104905 aattgtcagtgttgtctaatccccaatgtttactttaataagtgttagtgttgtctagtcc 104845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 351 - 463
Target Start/End: Original strand, 7019 - 7130
Alignment:
Q  351 gagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtg 450  Q
    ||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||    
T  7019 gagctgtttggaaattaatttcaatcaaatagttgtttgtat-cggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatg 7117  T
Q  451 ttgtctagtcctc 463  Q
    |||| ||||||||    
T  7118 ttgtatagtcctc 7130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 460
Target Start/End: Original strand, 167228 - 167384
Alignment:
Q  304 agcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 403  Q
    ||||| ||||||| ||||| ||| ||||||||| ||||||||  |  ||| ||||| |||||||||||||||||| |||||||||| |||| |||||| |    
T  167228 agcatttcgatgaccggaagaaaaagttgttggaaaagttgggccaagagttgtttggaaattaatttcaatcaagtatttgtttgcattcggtcaaact 167327  T
Q  404 tgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 460  Q
    ||||  |  |||| ||||||||||||||||| ||| ||||||||||| |||| ||||    
T  167328 tgtcagtagtgtcaagtccccagtgtttgctctaataattgtcagtgatgtcaagtc 167384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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