View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_16 (Length: 458)
Name: NF1590_high_16
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 28326073 - 28325643
Alignment:
| Q |
18 |
gacacaaaaaccatggagaagaatattcaaagtttcctcagcagtaggacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacatg |
117 |
Q |
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| T |
28326073 |
gacacaaaaaccatggagaagaatattcaaagtttcctcagcagtaggacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacatg |
28325974 |
T |
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| Q |
118 |
ttaccatcgaaagcgtgagctttgatgaggattgtccaagtatgaatgtctgggagaacacgttgaagatggttgttgtgggattcctccaattgttgag |
217 |
Q |
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| T |
28325973 |
ttaccatcgaaagcgtgagctttgatgaggattgtccaagtatgaatgtctgggagaacacgttgaagatggttgttgtgggattcctccaattgttgag |
28325874 |
T |
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| Q |
218 |
caaaggaaagaacagtagggtgatatcccattctaagaagggaagataaaacggcgttatattcggatatggaagcgtaaccatcagagagattgttttc |
317 |
Q |
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| T |
28325873 |
caaaggaaagaacagtagggtgatatcccattctaagaagggaagataaaacggcgttatattcggatatggaagcgtaaccatcagagagattgttttc |
28325774 |
T |
|
| Q |
318 |
aaaccaagtaacagcagaaatgtacttgttgaagcataagtaatcaggaagaataaccctagacccagaatcatcatcatagggaatagtgttagtgtta |
417 |
Q |
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| T |
28325773 |
aaaccaagtaacagcagaaatgtacttgttgaagcataagtaatcaggaagaataaccctagacccagaatcatcatcatagggaatagtgttagtgtta |
28325674 |
T |
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| Q |
418 |
ttgttattgttagtgttagagagtacctttg |
448 |
Q |
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| T |
28325673 |
ttgttattgttagtgttagagagtacctttg |
28325643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 6327123 - 6327225
Alignment:
| Q |
79 |
tttatgattttatggaagaaagacatggcggaaaacatgttaccatcgaaagcgtgagctttgatgaggattgtccaagtatgaatgtctgggagaacac |
178 |
Q |
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|||||||| |||| ||| ||| | || || ||| |||||||||||| |||| |||| | |||||||||||| |||||||||||||||||| ||||||| |
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| T |
6327123 |
tttatgatattattgaataaacagatagccgaagacatgttaccatggaaacagtgacatgtgatgaggattgaccaagtatgaatgtctggtagaacac |
6327222 |
T |
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| Q |
179 |
gtt |
181 |
Q |
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||| |
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| T |
6327223 |
gtt |
6327225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 28238819 - 28238707
Alignment:
| Q |
56 |
cagcagtaggacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacatgttaccatcgaaagcgtgagctttgatgaggattgtcca |
155 |
Q |
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| T |
28238819 |
cagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagccca |
28238720 |
T |
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| Q |
156 |
agtatgaatgtct |
168 |
Q |
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||| ||||||||| |
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| T |
28238719 |
agtgtgaatgtct |
28238707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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