View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_high_17 (Length: 446)

Name: NF1590_high_17
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_high_17
NF1590_high_17
[»] chr3 (9 HSPs)
chr3 (20-273)||(34088066-34088319)
chr3 (191-436)||(41126778-41127040)
chr3 (191-436)||(41131242-41131504)
chr3 (191-438)||(41134136-41134400)
chr3 (219-438)||(31243735-31243953)
chr3 (349-435)||(34088398-34088484)
chr3 (362-434)||(34089124-34089196)
chr3 (263-323)||(34088345-34088405)
chr3 (319-369)||(34088525-34088575)
[»] chr8 (1 HSPs)
chr8 (134-438)||(36221926-36222229)
[»] chr6 (2 HSPs)
chr6 (362-438)||(3087842-3087918)
chr6 (247-319)||(3087928-3087999)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 34088066 - 34088319
Alignment:
Q  20 tccagtccccacattcatttcatcaaccttgattttatggttttctctctttacgaactttccagtacctattttgtttcccagtactgaatcctactac 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  34088066 tccagtccccacattcacttcatcaaccttgattttatggttttctctctttacgaactttccagtacctattttgtttcccagttctcaatcctactac 34088165  T
Q  120 caaagcatcaattttacagtgaatctaaaaggacaacaaattaatcgattgcaatattttcaccccaacagcaaaattaggaattaggaaatatgaataa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34088166 caaagcatcaattttacagtgaatctaaaaggacaacaaattaatcgattgcaatattttcaccccaacagcaaaattaggaattaggaaatatgaataa 34088265  T
Q  220 atgagaatacttccaaattgcaagattttcaaattgctgcaacatatatctata 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34088266 atgagaatacttccaaattgcaagattttcaaattgctgcaacatatatatata 34088319  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 191 - 436
Target Start/End: Original strand, 41126778 - 41127040
Alignment:
Q  191 caaaattaggaattaggaaatatgaataaatgagaatacttccaaattgcaagattttcaaattgctgcaacatatatctataaaacgttttaaatatta 290  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||    
T  41126778 caaaattaggaatcaggaaatatgaataa-tgagaatacctccaaattgcaagattttcaaattgttgcaacatataagtataaaacgttttgaatatta 41126876  T
Q  291 tcacttcagcctttgaaga------------------acttcatcaactccttcgatagggtctgtcaaatatacctcaactccaaaagctaagagtata 372  Q
    ||||||  |||||||||||                  |||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||    
T  41126877 tcacttatgcctttgaagaacttttgaagaaccaagaacttcatcaactccttcgatagagtcattcaaatatacctcgactccaaaagctaagagtata 41126976  T
Q  373 ttttatccctcaagactaacattagatggctagtcacttaaaccataaagaccctcatcctatg 436  Q
     |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  41126977 atttatccctcaagactaacagtagatggctagtcacttaaactataaagtccctcatcctatg 41127040  T

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Target: chr3; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 191 - 436
Target Start/End: Original strand, 41131242 - 41131504
Alignment:
Q  191 caaaattaggaattaggaaatatgaataaatgagaatacttccaaattgcaagattttcaaattgctgcaacatatatctataaaacgttttaaatatta 290  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||    
T  41131242 caaaattaggaatcaggaaatatgaataa-tgagaatacctccaaattgcaagattttcaaattgttgcaacatataagtataaaacgttttgaatatta 41131340  T
Q  291 tcacttcagcctttgaaga------------------acttcatcaactccttcgatagggtctgtcaaatatacctcaactccaaaagctaagagtata 372  Q
    ||||||  |||||||||||                  |||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||    
T  41131341 tcacttatgcctttgaagaacttttgaagaaccaagaacttcatcaactccttcgatagagtcattcaaatatacctcgactccaaaagctaagagtata 41131440  T
Q  373 ttttatccctcaagactaacattagatggctagtcacttaaaccataaagaccctcatcctatg 436  Q
     |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  41131441 atttatccctcaagactaacagtagatggctagtcacttaaactataaagtccctcatcctatg 41131504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 191 - 438
Target Start/End: Original strand, 41134136 - 41134400
Alignment:
Q  191 caaaattaggaattaggaaatatgaataaatgagaatacttccaaattgcaagattttcaaattgctgcaacatatatctataaaacgttttaaatatta 290  Q
    |||||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||    
T  41134136 caaaattatgaatcaggaaatatgaataa-tgagaatacctccaaattgcaagattttcaaattgttgcaacatataagtataaaacgttttgaatatta 41134234  T
Q  291 tcacttcagcctttgaaga------------------acttcatcaactccttcgatagggtctgtcaaatatacctcaactccaaaagctaagagtata 372  Q
    ||||||  |||||||||||                  |||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||    
T  41134235 tcacttatgcctttgaagaacttttgaagaaccaagaacttcatcaactccttcgatagagtcattcaaatatacctcgactccaaaagctaagagtata 41134334  T
Q  373 ttttatccctcaagactaacattagatggctagtcacttaaaccataaagaccctcatcctatgct 438  Q
     ||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||    
T  41134335 atttattcctcaagactaacactagatggctagtcacttaaactataaagtccctcatcctatgct 41134400  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 219 - 438
Target Start/End: Complemental strand, 31243953 - 31243735
Alignment:
Q  219 aatgagaatacttccaaattgcaagattttcaaa-ttgctgcaacatatatctataaaacgttttaaatattatcacttcagccttt-gaagaacttcat 316  Q
    ||||| ||||| |||||||||||||||||  ||| ||| |||| |||||| |||||||| ||||| | ||||||| |||  | |||| ||||||||||||    
T  31243953 aatgaaaatacctccaaattgcaagatttcaaaaattgttgcagcatatagctataaaatgtttttactattatctcttatggcttttgaagaacttcat 31243854  T
Q  317 caactccttcgatagggtctgtcaaatatacctcaactccaaaagctaagagtatattttatccctcaagactaacattagatggctagtcacttaaacc 416  Q
    ||||| |   || ||||| |||||||||||||||  ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| | ||||     
T  31243853 caactac---gacagggtatgtcaaatatacctcggctccaaaagctgagagtataatttatccatcaagactaacattagatggctagtcaataaaact 31243757  T
Q  417 ataaagaccctcatcctatgct 438  Q
    |||||| ||||||| |||||||    
T  31243756 ataaagcccctcattctatgct 31243735  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 34088398 - 34088484
Alignment:
Q  349 tcaactccaaaagctaagagtatattttatccctcaagactaacattagatggctagtcacttaaaccataaagaccctcatcctat 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34088398 tcaactccaaaagctaagagtatattttatccctcaagactaacattagatggctagtcacttaaactataaagaccctcatcctat 34088484  T

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Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 34089124 - 34089196
Alignment:
Q  362 ctaagagtatattttatccctcaagactaacattagatggctagtcacttaaaccataaagaccctcatccta 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34089124 ctaagagtatattttatccctcaagactaacattagatggctagtcacttaaactataaagaccctcatccta 34089196  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 34088345 - 34088405
Alignment:
Q  263 atatatctataaaacgttttaaatattatcacttcagcctttgaagaacttcatcaactcc 323  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34088345 atatatatataaaacgttttaaatattatcacttcagcctttgaagaacttcatcaactcc 34088405  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 34088525 - 34088575
Alignment:
Q  319 actccttcgatagggtctgtcaaatatacctcaactccaaaagctaagagt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34088525 actccttcgatagggtctgtcaaatatacctcaactccaaaagctaagagt 34088575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 134 - 438
Target Start/End: Original strand, 36221926 - 36222229
Alignment:
Q  134 tacagtgaatctaaaaggacaacaaattaatcgattgcaatattttcaccccaacagcaaaattaggaattaggaaat-atgaataaatgagaatacttc 232  Q
    |||||| ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||    || || ||||| ||| ||||| ||    
T  36221926 tacagtaaatctaaaaggaagaaaaattaatcgattgcaatattttcaccccaacagcaaaattaggaactatattattattaataa-tgaaaatacctc 36222024  T
Q  233 caaattgcaagattttcaaa-ttgctgcaacatatatctataaaacgttttaaatattatcacttcagccttt-gaagaacttcatcaactccttcgata 330  Q
    |||||||||||||||| ||| ||| |||| |||||| | |||||| ||||| | ||||||| |||  | |||| ||||||||||||||||| |   || |    
T  36222025 caaattgcaagattttaaaaattgttgcagcatatagccataaaatgtttttactattatctcttatggcttttgaagaacttcatcaactac---gaca 36222121  T
Q  331 gggtctgtcaaatatacctcaactccaaaagctaagagtatattttatccctcaagactaacattagatggctagtcacttaaaccataaagaccctcat 430  Q
    |||| |||||||||||||||  ||||||||||| |||||||| ||||||| |||||||||||||||||||| |||||| | |||| |||||| |||||||    
T  36222122 gggtatgtcaaatatacctcggctccaaaagctgagagtataatttatccatcaagactaacattagatggatagtcaataaaactataaagcccctcat 36222221  T
Q  431 cctatgct 438  Q
     |||||||    
T  36222222 tctatgct 36222229  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 3087918 - 3087842
Alignment:
Q  362 ctaagagtatattttatccctcaagactaacattagatggctagtcacttaaaccataaagaccctcatcctatgct 438  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||  ||||| ||||||||    
T  3087918 ctaagagtataatttatccctcaagactaacattatatggccagtcacttaaactataaagcacctcaacctatgct 3087842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 3087999 - 3087928
Alignment:
Q  247 ttcaaattgctgcaacatatatctataaaacgttttaaatattatcacttcagcctttgaagaacttcatcaa 319  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  3087999 ttcaaattgctgcaacatatagctataaaacg-tttgaatattatcacttttgcctttgaagaacttcatcaa 3087928  T

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